Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01528 ATGCCGTTCGGTTTGGTCTCGGCCTGGAATAAGCGCCGAAGAAGCAAGTCTCAAGATCATACAGATccatGGATTTACAAACCTGCGCAACTTTGGCAACTTGAAGATAAATCGCCGCGTCCTACAAAGAAGTTGCATGGATCAACTGTTTTCACACTCAAGGAGATGGAAGAGGCAACATGTTCATTCAGTGAAGAAAATCTGCTTGGAAAGGGAGGATTTGGCAAAGTCTACCGAGGCACTTTGCGATCAGGAGAGGTTGTAGCAATCAAGAAAATGGAGCTTCCGGCAATTAAAGAAGCAGAGGGGGAACGTGAATTCCGAGTCGAAGTTGACATTTTGAGCAGACTGAGCCACCCaaatcttgtttctttgataggCTACTGTGCTGATGGAAAGCATAGATTCCTAGTATATGGATATATGATTAATGGGAACCTGCAAGATCATTTGAATGgaATTGGAGAAAGAAACATGGATTGGCCTCGAAGACTACAGGTGGCATTGGGAGCTGCCAAAGGGCTTGCTTATCTCCATTCAAGTTCTGATGTTGGAATTCCTATTGTTCATAGAGATTTCAAATCGACCAACATTCTCTTAGATGCCAACTTTGAAGCGAAGATATCTGATTTTGGGCTTGCCAAGTTAATGCCAGAAGGACAGGAGACACATGTGACTGCCAGAGTGCTTGGCACCTTTGGTTACTTTGATCCCGAGTATACATCGACAGGGAAACTCACTCTCCAAAGTGATGTTTATGCTTTTGGTGTTGTTCTTCTGGAGCTTTTGACTGGACGTCGAGCTGTAGATCTAAACCAGGGTCCTAATGATCAGAACCTTGTACTACAGGTGAGGCACATACTGAATGACCGCAAGAAGCTTCGGAAGGTGATAGATCCAGATATGGCTCGAAATTCTTACACCATTCAGTCTATAGTCATGTTTGCCAATTTGGCATCAAGATGTGTACGAGCTGAAAGTAATGAGCGGCCTTCAATGGCAGATTGTGTACAAGAGATCCAAATGATTATCTATACAAATTCAAAAGGCTTGGGAATGGTTATGCATAGCTTGAGACTGATCTAG 1086 0.4273 MPFGLVSAWNKRRRSKSQDHTDPWIYKPAQLWQLEDKSPRPTKKLHGSTVFTLKEMEEATCSFSEENLLGKGGFGKVYRGTLRSGEVVAIKKMELPAIKEAEGEREFRVEVDILSRLSHPNLVSLIGYCADGKHRFLVYGYMINGNLQDHLNGIGERNMDWPRRLQVALGAAKGLAYLHSSSDVGIPIVHRDFKSTNILLDANFEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRHILNDRKKLRKVIDPDMARNSYTIQSIVMFANLASRCVRAESNERPSMADCVQEIQMIIYTNSKGLGMVMHSLRLI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01528 361 CDD STKc_IRAK 69 341 - -
Tsu05g01528 361 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 361 - -
Tsu05g01528 361 Gene3D Phosphorylase Kinase; domain 1 31 141 - -
Tsu05g01528 361 Gene3D Transferase(Phosphotransferase) domain 1 142 352 - -
Tsu05g01528 361 PANTHER OS01G0750732 PROTEIN 1 361 - -
Tsu05g01528 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Tsu05g01528 361 PIRSF ILK 29 351 - -
Tsu05g01528 361 MobiDBLite consensus disorder prediction 1 21 - -
Tsu05g01528 361 ProSiteProfiles Protein kinase domain profile. 63 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01528 361 Pfam Protein kinase domain 64 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01528 361 SUPERFAMILY Protein kinase-like (PK-like) 40 346 IPR011009 -
Tsu05g01528 361 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01528 Tsu-Chr5 14797659 14801126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01528 46 340 Receptor kinase-like Gene Family AT3G58690 48.667 9.19e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Tsu05g01528 Pkinase 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01528 - - gmx:100796654 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01528 05 14797659 14801126 Tsu05g01528 05 14797659 14801126 ECH