Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01514 atgcATTGGATTCACTCTCAAATCACAAACCCTTCAATTATTTCTCCatattcttcttattcttcttcaatttcttaTAATTCTAACAACAACCAGAAAAATTCAGAACAAATTccaatttcttcatcttctagcAACAAAATAAGCCCTGCAATTCTTTTCATCATAGTTATATTAgctataatatttttcatcttaGGTTTACTTCATTTACTTGTTAGATTTCTCATAAAGCATagatcttcatcatcatcatcaacaatttctCAATCAAATAGGTTTCAAGAAATGTCTGAATCTGATGCATACCAAAGACAATTACAGCAACTTTTCAATCTTCATGATTCAGGTTTAGATCAAGCATTCATTGATGCTCTTCCTGTTTTTATATACAAAGATATTATTGGTTTGAAAGAACCATTTGATTGTGCTGTTTGTTTATGTGAATTTTTGGAACAAGATAAGTTAAGATTGGTACCTAATTGTAACCATGCTTTTCATATTAATTGTATAGATACATGGTTGTTATCGAATTCATCTTGTCCTTTATGTAGAGGTACCCTTTATTCACAAGGgttttcttttgataaaaatcatgtttttgaGTTCGACGATCAAAGGGACGAAGATTTGGTCTTAGGTATTGGTTCTACTAACAAAGATATGGAAAGTCACATTATGTATGGGAAAAGGGTTTTTTCTGTTAGGCTTGGAAAGTTTAAAAGCTCAAATAATAGTGAAGGGATTGAAAAAAGTGAAGGAGAGAGTAGTAATTGTAATTTAGATGTTAGAAGATGTTATTCAATGGGATCTTTTCAATATGTTCTTGCTGATTCAGATTTGCAAGTTACTTTGAAAGGTTCTAAAGGTGATAGTATGAGACAATTGAAGGGAATTAGAGAAGTTTGTGATGGGAGTTTTTCCAATGATGGTGATGTTGAAGgcaaaaaaatcaacattgCAAGGAAAGGTGAAAGTTTTTCTGTTTCAAAGATATGGCAATGGTCTAAGAAAGATAGTAAGATACCAAGTTCATCAGATACACATTTTCATAATTGTGTTGCCAATGAAAGTTTGCATCGGATGAATAAAGCTAGAGGTACATGA 1107 0.2782 MHWIHSQITNPSIISPYSSYSSSISYNSNNNQKNSEQIPISSSSSNKISPAILFIIVILAIIFFILGLLHLLVRFLIKHRSSSSSSTISQSNRFQEMSESDAYQRQLQQLFNLHDSGLDQAFIDALPVFIYKDIIGLKEPFDCAVCLCEFLEQDKLRLVPNCNHAFHINCIDTWLLSNSSCPLCRGTLYSQGFSFDKNHVFEFDDQRDEDLVLGIGSTNKDMESHIMYGKRVFSVRLGKFKSSNNSEGIEKSEGESSNCNLDVRRCYSMGSFQYVLADSDLQVTLKGSKGDSMRQLKGIREVCDGSFSNDGDVEGKKINIARKGESFSVSKIWQWSKKDSKIPSSSDTHFHNCVANESLHRMNKARGT 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01514 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 7 362 - -
Tsu05g01514 368 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 362 - -
Tsu05g01514 368 CDD RING-H2_PA-TM-RING 142 185 - -
Tsu05g01514 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 191 IPR013083 -
Tsu05g01514 368 SMART ring_2 143 184 IPR001841 -
Tsu05g01514 368 SUPERFAMILY RING/U-box 122 191 - -
Tsu05g01514 368 Pfam Ring finger domain 142 185 IPR001841 -
Tsu05g01514 368 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01514 Tsu-Chr5 14614142 14615700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01514 47 346 C3H Transcription Factor Family AT2G18650 41.840 3.50e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01514 - - gmx:100805154 412.92