Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01478 ATGATCCGAACGGAAAACGGGTCGAGTCGTCGGATATTGAATTTTCCGGCGGTTCATCCATGTGTTAACATTGCTTCTTCTACCCTTTTATCTTCTCTCATCAATCTCTCTAACGagatttcaaaatttcaatacaaattcTTCTCTTCCAACAAACGAAACGCGAAAAACGCTATTCGTttgattcatcttcttcaaccgTTTCTTCATGAGATCCGAGAGAATCATTCAAATCTTCCGGCTCCGGCGACCCTTTGTTTTTCTGAGCTTCATGTCATCTTCCAGAAACTTTTTTTCTTGATGGAAGATTTGACCCGTGAAGGTGTTCGTTTGTTTATGTTAATGGAGTCCGGTCGGGTTGCAAATATGTTTCGGGTCTTGTTTAGATCCGTTGCAAGTGCACTTGATGTTTTTCCTTTTGATTCTGTTGATGTGTGTGTGGAAGGTAAAGAGGATGTTTTGTTGCTGATTAAGCAAGTTAGGGAGGGAAGGTTTGATTTTGAGGTTGATGATGAAGAGATAGTGATGTGTGTTATGAATGTCTTGAACCTGTTTGAGAAAAGGGTTGTTCCAAATAAGTTTGATTTGAAGAAGGTTCTTGATTATATTGGGGTTTGTGAGTGGAGTGAGATTAATAAAGAGGTGAAGTTTTTGGATAGTGAAATTGGGTTTGAGTGGTTGAATGATGAAAAGAGAAAGGTGGGGTTTTTAAGTAGTTTGATGGGGTTTATGAGTTATTGTAGATGTGTGGCGGTGGAAGTATTGGATTGTGAAGAAGAGGGAAAAAGTAGTAAGAAATTTGATTCAAGAAGGGAGAGTGAGATGATTTTGAGTTGTTTGAACTCGGATGATTTTCGATGTCCTGTCTCTTTGGAAATCATGAGTGATCCTGTGACTATCGAAACAGGTCATACTTATGATCGTTCTTCGATTCTCAAATGGTTTAGAAGTGGAAATGCAACATGTCCAAAGACAGGTAAAAGTGTTAGCAGCATTGAATTGGTACCTAATTTGGTGCTGAGGAAGTTGATTCAGCAATATTGCAATGTCAACGGAATTCCTAGTGGAGATTCAGGTCGTCGGAGTCGTGACATTACTAGGACGGCTGAGCCTGGAAGTGAGGCTGCAGAGGGAGCAATGAAACTCTTGGCTGATTTTCTTTGTGAAAGTCTTGACAATGGAAATGTGGAGCAGAAGAACCATGCTGCAGTTGAGATAAGGGTTCTTACCAAAACAAGCATTTTTAGTAGGTCTTGTTTGGTAGAAGCTGGTTCGGTTcctcttttgttgttgttgttggcaTCAAGTGATTCATCAGCACAAGAGAATTCTATTGCAGCCCTTTTGAACCTCTCAAAATACACCAGAAGTAGAAGTGAAATGGTTGAAAATTGGGGGTTAGAAATGATTGTTGGCGTCTTAAACAAAGGGATAAAGATTGAAGCAAAGCAACATGCTGCAGCAGTGTTGTTTTACCTTGCTTCAAATCCTGATCATGGAAACTTAATAGGCGAAGAGCCCGAAGCAATTCCCTCCTTGATCAGTCTCATCAAAGATGGGACCGATCGAAGTGTAAAGAATGGTTTGGTTGCAATTTTTGGCCTCCTAAAACACCATGAAAACCACAAGAGGATACTTGCTGCTCAAGCAATTCCTTTGTTAGTTAACATCTTGAAAGCATCTCAAAAAGAAGAACTTGTCACAGACACGCTAGCAATTCTAGCAACTCTTGCAGAGAAAAGTGAAGGAACATCAGAAATCCTTCGTTTTGGAGCTTTGCATGTAGCCGTTGAAGTTATGAGTTCTTCTTCGACAACTTCAAGATTAGGGAAAGAGCATTGTGTGTCATTGTTACTTTCTCTATCAATAAATGGAGGAGAAAATGTGGTTGCTCATTTAGTGAAGAGTTCTTCACTCATGGAATCATTATATTCACAAATGAGTGAAGGAACTTTTAGAGCAAGCAAGAAAGCAAGTTCTCTCATAAGGGTTCTCCATGATTTTTATGAAAGGAGATCCTCTAACTACAAGGCATCAGTTATTCCACGAGAACAGTTTATTCATGTATGGTAA 2073 0.3845 MIRTENGSSRRILNFPAVHPCVNIASSTLLSSLINLSNEISKFQYKFFSSNKRNAKNAIRLIHLLQPFLHEIRENHSNLPAPATLCFSELHVIFQKLFFLMEDLTREGVRLFMLMESGRVANMFRVLFRSVASALDVFPFDSVDVCVEGKEDVLLLIKQVREGRFDFEVDDEEIVMCVMNVLNLFEKRVVPNKFDLKKVLDYIGVCEWSEINKEVKFLDSEIGFEWLNDEKRKVGFLSSLMGFMSYCRCVAVEVLDCEEEGKSSKKFDSRRESEMILSCLNSDDFRCPVSLEIMSDPVTIETGHTYDRSSILKWFRSGNATCPKTGKSVSSIELVPNLVLRKLIQQYCNVNGIPSGDSGRRSRDITRTAEPGSEAAEGAMKLLADFLCESLDNGNVEQKNHAAVEIRVLTKTSIFSRSCLVEAGSVPLLLLLLASSDSSAQENSIAALLNLSKYTRSRSEMVENWGLEMIVGVLNKGIKIEAKQHAAAVLFYLASNPDHGNLIGEEPEAIPSLISLIKDGTDRSVKNGLVAIFGLLKHHENHKRILAAQAIPLLVNILKASQKEELVTDTLAILATLAEKSEGTSEILRFGALHVAVEVMSSSSTTSRLGKEHCVSLLLSLSINGGENVVAHLVKSSSLMESLYSQMSEGTFRASKKASSLIRVLHDFYERRSSNYKASVIPREQFIHVW 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01478 690 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 4 679 - -
Tsu05g01478 690 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Tsu05g01478 690 Gene3D - 354 676 IPR011989 -
Tsu05g01478 690 PANTHER U BOX DOMAIN-CONTAINING 4 679 - -
Tsu05g01478 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 424 466 IPR000225 GO:0005515
Tsu05g01478 690 SUPERFAMILY RING/U-box 283 353 - -
Tsu05g01478 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 353 IPR013083 -
Tsu05g01478 690 Pfam U-box domain 283 349 IPR003613 GO:0004842|GO:0016567
Tsu05g01478 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 549 592 IPR000225 GO:0005515
Tsu05g01478 690 Pfam Armadillo/beta-catenin-like repeat 417 452 IPR000225 GO:0005515
Tsu05g01478 690 CDD RING-Ubox_PUB 285 327 IPR045210 -
Tsu05g01478 690 SUPERFAMILY ARM repeat 384 665 IPR016024 -
Tsu05g01478 690 SMART arm_5 412 453 IPR000225 GO:0005515
Tsu05g01478 690 SMART arm_5 538 579 IPR000225 GO:0005515
Tsu05g01478 690 SMART arm_5 454 495 IPR000225 GO:0005515
Tsu05g01478 690 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01478 Tsu-Chr5 14150393 14152682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01478 1 690 U-box Gene Family AT1G60190 45.429 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01478 - - gmx:100795816 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01478 05 14150393 14152682 Tsu05g01478 05 14150393 14152682 ECH