Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01466 ATGGCTAATGAAAATAAGTCAAATttgaatatagaaaaaaaagattCTGAAAAAGCTTCTGCTCCGTCTCCATCTTCATCTTTATTACAGGTCTCAGTTCCTCCAGAAAATGTACCGTCAAATTCTCCACCACCGTCACCAACAACACCGCCACAAAATTCTTCGCCACCATCTTCATCTTTATTACAATCTGAGGTATCAGTTCCTCCAGAAAATGTACCATCAAATTCTCCACCACCGTCGCCAACAACACCGCCACAAAATTCTTCGCCACCACATTCACCGTCTTATTCTCCACCACCGGCTCAAGCGCAATCTCCACATTCTTCGCCACCTCCATCAAAAGTTTCACCTCCTCCACCTTCTCAATCGTCGCCGCCTACAACACCGACATCGTCTCCGCAGCCTCCATCATTTTCGGCACCACCACCGGTCGGTAATAATTCTCCCCTTCCAAATGTTCCGCCTTCTTCCAAAACTAGTCCACCCCCGCCGCAAAATCAAAATCGTCCTTCACCGCCACAATCATCATCAGGTTCCCCAAGCTCCCATTCAAAACCAAGCTCTCCTTCTTCCAAAAGCAACTCTCTATCCAAACAGCCCTCCTCCAATGATAATATAGGACAATACATTGGTTTTTCTATAGCAGCAGTTTTTGTTCTTGCATTTATTgcattcattatttttttcgtattaaaaagaaaagacagACGAGGGAATTTCTATGGTATGCCACCGCCCCATATGAAACCTCAAATGAATGGAGAAGTGCGTTATTATGTAGAGTCACCGGGTTTTGGATATAGTCATATGAACAATACAAGTGCAATGCAACATATGAGAACTCCTTCAGACTCaatacaacaacaaattagTGGTGGCCAAATAGTTTTTAGTTATGACCATGTTGCTAAAATTACTAACGGATTTTCAAGTGAAAACGTGATAGGAGAAGGAGGTTTTGGGTATGTTTACAAGGCTTCAATACCTGATGGTAGAATTGGAGCAGTTAAGTTGTTGAAGGCTGGTAGTGGTCAAGGAGAAAGAGAGTTTAGAGCAGAGGTTGGTACTATTAGTCGTATTCATCATCGACATTTGGTATCGTTGATTGGTTATTGTATATCTGAGCAACAAAGAGTTCTCATTTATGAGTACGTTCCTAATGGAAATCTTGATCAACATTTGCATGGAAGTGCATGGAATGTTTTGGATTGGCCCAAGAGGATGAAGATAGCAATTGGTGCTGCAAGGGGCCTTGCATATCTACATGAAGGCTGCAACCCAAAGATTATTCACAGAGATATTAAGTCATCAAATATACTTTTGGACAATGCTTATGAGGCACAGGTTTCAGACTTTGGACTTGCCAAATTAACCGATGCTGCTCATACTCATGTATCAACTAGGGTGATGGGTACTTTTGGCTACATGGCTCCAGAGTATGCAACGACTGGAAAACTAACGGATAGATCAGATGTTTTCTCATTTGGAGTTGTTCTTCTTGAGCTTATAACTGGAAGGAAACCTGTTGATTCAACACAGCCTGTGGGAGAGGAGAGTTTGGTTGAGTGGGCCCGTCCACTTCTCGTTCGTGCAATTGAAACAGGCGACTTTAGTGATCTAGTAGACCCAAGACTTCAACGACAATATATTGATAGTGAAATGGTTAGAATGATTGAAGCAGCTGCAGCATGTGTTCGGACTTCTGCCCCAAAACGGCCGCGGATGGTTCAGATTGCAAGAGCCTTGGACCATGGAGATCAACTATATGATCTATCAAACGGGATGAAGTATGGTCAGAGCAGAATTTATGATTCTGATCAGTATAATGAAGacttaataaaattcaaaaggATGGCTAATGGAAGTTTTGGTGACTCTTCTGAATTTGATATGCACAACACAGAATACGGTTCAAGAGACATGTCTAGATCTGCATTTGTGCCACCACACAGCACTGTTGATATTGATAACAAGTCTTGA 1983 0.408 MANENKSNLNIEKKDSEKASAPSPSSSLLQVSVPPENVPSNSPPPSPTTPPQNSSPPSSSLLQSEVSVPPENVPSNSPPPSPTTPPQNSSPPHSPSYSPPPAQAQSPHSSPPPSKVSPPPPSQSSPPTTPTSSPQPPSFSAPPPVGNNSPLPNVPPSSKTSPPPPQNQNRPSPPQSSSGSPSSHSKPSSPSSKSNSLSKQPSSNDNIGQYIGFSIAAVFVLAFIAFIIFFVLKRKDRRGNFYGMPPPHMKPQMNGEVRYYVESPGFGYSHMNNTSAMQHMRTPSDSIQQQISGGQIVFSYDHVAKITNGFSSENVIGEGGFGYVYKASIPDGRIGAVKLLKAGSGQGEREFRAEVGTISRIHHRHLVSLIGYCISEQQRVLIYEYVPNGNLDQHLHGSAWNVLDWPKRMKIAIGAARGLAYLHEGCNPKIIHRDIKSSNILLDNAYEAQVSDFGLAKLTDAAHTHVSTRVMGTFGYMAPEYATTGKLTDRSDVFSFGVVLLELITGRKPVDSTQPVGEESLVEWARPLLVRAIETGDFSDLVDPRLQRQYIDSEMVRMIEAAAACVRTSAPKRPRMVQIARALDHGDQLYDLSNGMKYGQSRIYDSDQYNEDLIKFKRMANGSFGDSSEFDMHNTEYGSRDMSRSAFVPPHSTVDIDNKS 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01466 660 MobiDBLite consensus disorder prediction 20 36 - -
Tsu05g01466 660 MobiDBLite consensus disorder prediction 55 71 - -
Tsu05g01466 660 SMART serkin_6 310 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01466 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Tsu05g01466 660 PANTHER RECEPTOR-LIKE KINASE 69 649 - -
Tsu05g01466 660 MobiDBLite consensus disorder prediction 640 660 - -
Tsu05g01466 660 SUPERFAMILY Protein kinase-like (PK-like) 285 583 IPR011009 -
Tsu05g01466 660 ProSiteProfiles Protein kinase domain profile. 310 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01466 660 MobiDBLite consensus disorder prediction 1 203 - -
Tsu05g01466 660 Pfam Protein tyrosine and serine/threonine kinase 313 582 IPR001245 GO:0004672|GO:0006468
Tsu05g01466 660 MobiDBLite consensus disorder prediction 72 171 - -
Tsu05g01466 660 Gene3D Transferase(Phosphotransferase) domain 1 386 599 - -
Tsu05g01466 660 MobiDBLite consensus disorder prediction 172 203 - -
Tsu05g01466 660 Gene3D Phosphorylase Kinase; domain 1 269 385 - -
Tsu05g01466 660 MobiDBLite consensus disorder prediction 37 54 - -
Tsu05g01466 660 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 69 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01466 Tsu-Chr5 13945213 13949005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01466 212 641 Trihelix Transcription Factor Family AT1G70460 57.333 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Tsu05g01466 PK_Tyr_Ser-Thr 6.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01466 - - lja:Lj2g3v1414850.1 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01466 05 13945213 13949005 Tsu05g01466 05 13945213 13949005 ECH