Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01457 ATGTCAACACTAAACCATCTTTTTGATCTTCCTGAAcaaatatgttatgtacaatgTGGATTCTGCAACACCATTTTAATGGTAAGTGTTCCATGCAGCAGTTTATCAATGGTTGTGACAGTAAGATGTGGTCACTGCACAAGTCTTTTATCTGTTAATATGATGAAAGCTTCTTTTGTCCCTTTTCATCTTTTAGCATCTCTTACTAATCTTGAGCAAAAAGAAAGTAGTAGTCCAGATGAAGATGCAAACAAGGGTTTGAACAATAATAGTTCATCCATGATGACTTATTCTGattgtgaagaagatgatgtaATTCCAATCACCAATGTAGTCAATAAACCACCTGAGAAGAGACAAAGAACACCATCAGCTTATAACCGGTTCATCAAAGAAGAGATTAAAAGGCTTAAGGCTCAACACCCTGATATGGCTCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATtGGGCCAATTGCCCCCAAATTCAGTTCAATGGAGATGAAGAAAGCTGTAACCAGACAGATCAACTAGTGGATCTTGACTCCCAAGTGGACCCTCATGATGCtgagATGAATGAAGAAGAACAAGGATTCCGTGGAAGAAAAGTACCAAGAAATTCCATCTTGGAAAGGACACCATTTGAGTGA 651 0.361 MSTLNHLFDLPEQICYVQCGFCNTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTNLEQKESSSPDEDANKGLNNNSSSMMTYSDCEEDDVIPITNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAQHPDMAHKEAFSTAAKNWANCPQIQFNGDEESCNQTDQLVDLDSQVDPHDAEMNEEEQGFRGRKVPRNSILERTPFE 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01457 216 SUPERFAMILY HMG-box 109 161 IPR036910 -
Tsu05g01457 216 Gene3D High mobility group box domain 109 197 IPR036910 -
Tsu05g01457 216 MobiDBLite consensus disorder prediction 187 209 - -
Tsu05g01457 216 PANTHER PROTEIN YABBY 6-RELATED 1 182 IPR006780 GO:0007275
Tsu05g01457 216 MobiDBLite consensus disorder prediction 73 94 - -
Tsu05g01457 216 CDD HMGB-UBF_HMG-box 121 162 - -
Tsu05g01457 216 MobiDBLite consensus disorder prediction 187 216 - -
Tsu05g01457 216 Pfam YABBY protein 11 166 IPR006780 GO:0007275
Tsu05g01457 216 PANTHER AXIAL REGULATOR YABBY 4 1 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01457 Tsu-Chr5 13864298 13866999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01457 2 216 C2C2-YABBY Transcription Factor Family AT1G23420 55.947 7.29e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Tsu05g01457 YABBY 2.8e-64 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01457 K25796 - gmx:100804172 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01457 05 13864298 13866999 Tsu05g01457 05 13864298 13866999 ECH