Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01456 ATGCAGATCTTCGTCAAAACCCTAACGGGTAAGACGATAACCCTCGAGGTTGAATCTTCTGATACCATCGACAACGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCGGATCAACAACGACTCATCTTCGCAGGAAAACAGCTTGAAGACGGCCGCACTCTTGCCGACTACAATATCCAGAAGGAATCAACTCTTCACCTTGTTCTCCGTCTCCGTGGTGGTGCTAAGAAGCGTAAGAAGAAGACTTACACTAAGCCAAAGAAGATTAAGCATAAGCATAGGAAAGTTAAGCTTGCTGTTCTTCAGTTTTATAAGGTTGATGATTCTGGAAAGGTTCAGAGATTGAGGAAGGAGTGTCCTAATGCTGAATGTGGTGCTGGAACTTTCATGACTAATCATTTTGATCGTCATTATTGTGGCAAGTGTGGTTTGACCTATGTTTATCAGAAAGCTGATGCTtaa 468 0.4295 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMTNHFDRHYCGKCGLTYVYQKADA 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01456 155 SMART Ribosomal_S27_2 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Tsu05g01456 155 Gene3D - 81 155 IPR038582 -
Tsu05g01456 155 PRINTS Ubiquitin signature 53 74 IPR019956 -
Tsu05g01456 155 PRINTS Ubiquitin signature 11 31 IPR019956 -
Tsu05g01456 155 PRINTS Ubiquitin signature 32 52 IPR019956 -
Tsu05g01456 155 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Tsu05g01456 155 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 1 146 - -
Tsu05g01456 155 SMART ubq_7 1 72 IPR000626 GO:0005515
Tsu05g01456 155 Pfam Ribosomal protein S27a 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Tsu05g01456 155 SUPERFAMILY Zn-binding ribosomal proteins 100 153 IPR011332 GO:0006412
Tsu05g01456 155 PANTHER UBIQUITIN 1 146 - -
Tsu05g01456 155 CDD Ubl_ubiquitin 1 76 - -
Tsu05g01456 155 Gene3D - 1 80 - -
Tsu05g01456 155 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Tsu05g01456 155 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Tsu05g01456 155 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01456 Tsu-Chr5 13854897 13855364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01456 1 154 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 91.558 5.28e-92 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01456 K02977 - gmx:100527579 281.567