Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01455 ATGGATGATGTTGAAAGGATTTTGAGATATTTGAAGTCCACTCCTGGAAAAGGAATTTTATTCTCAAATCATGGAAACTTGAAGGTAGAAGGGTATACCGACGCTGACTGGGCAGGatcaaaaaatgataaaaggtCTATCTCTCGTTACTTTACAAATTGTAGGGGGAATCTTGTAACTTGGAGGAGTAAAAAACAACCGGTAGTAGCAAGGTCTAGTGTTGAAGCAGAGTTTAGAGGCATGACACTAGGAGTTTGTGAACTTTTATGGATACAAAATGTTCTATTAGATTTGGGTTTTGAACCAAGGGAGACTATGACTTTGTATTGTGACAATACATCAGCAATTGCTCACAATCCTGTGCAGCATGATAGAACGAAACATGTAGAAATTGATAGACATTTCATCAAAGAGAAACTTGAAGCTgaaatgatttctttttcttttgtaagaTCTGAACTGCACAGTATTATTGGTTGGTGTTGGTGTGATTCATCACATCTTCTTCATACACacgtctctctctctcacatatGCAACAAAGAAAGAAGCAAAGCCAAAGCATCTTCTTTCTGTTTCTCCATTGACACTTCTCAACTGATTATCAAGTCATACTTGGAAAATCTAGCTACCATGACACCAGATACTAATACCTTGAGTTATTGGTTGAATTGGAGATTTTTCATATGtgcattatttattttattgacgaTGGGTTTAGCATCATTTTTGATATGGAAGTATGAAGAATTCAATAAATCAAGAAATGAGAGAGTAGAAGAAGGGCGGCGAGAAACAGTTGGGTTACTATATGAAGATGAAGCATGGAATACATGTCTTAAAGGAATTCATCCTAATTGGCTTCTTTCTTAcagaatattttcttttcttgtgcttttgGGTTTGCTCATTGCTAATGTAGCTGTTGATGGAGGTGGCATATTTTTCTTCTACACTCAGTGGACCTTTGCTTTGGTCACTATTTACTTTGCGCTCGCATCTTGtttttccttatataaaacTTGCTTCAACCACAAGAAATTTGAAGCAAGCGCACCAGATGCAGAACGAGGCACTTATGTGGCTCCAAGACTCGATGGAATTTCAGATATACCTATCCTATCTAAGAGTTCGGATGCCTATCAGGAATCTCTCAGTCAGAATACTGCTGGTGTAGGGGGTTATActattcaaatattatttcagACTTGTGCAGGTGCTTCGATGCTCACTGACAGTGTATTCTGGCTCGTTCTTTATCCTTTTATGACACCCAAAGACTTCCGTCTCGATATTTTCACTGTTGGTATGCACTCTGTTAACGCTGTGCTACTCCTTGGTGAAACATCATTGAATTGCATGAGCTTTCCAGTGTTTCGATTTGCATATTTTATCTTGTGGACGGCTACATTTGTGATTTTTCAGTGGATCATCCACTCCGTTGTTTCGCTTTGGTGGCCTTACCCTTTCCTTGATTTGTCATCCTCATATGCTCCCTTATGGTACTTGGCTGTAGGTATAATGCACATTCCATGCTATAGCGTCTTTGCCTTAATAGTGAAGTTGAAGCACTTGTGGTTGTCAAAATTGTGTCCTGGTGCATGTCAGTTTCTacgatga 1620 0.3586 MDDVERILRYLKSTPGKGILFSNHGNLKVEGYTDADWAGSKNDKRSISRYFTNCRGNLVTWRSKKQPVVARSSVEAEFRGMTLGVCELLWIQNVLLDLGFEPRETMTLYCDNTSAIAHNPVQHDRTKHVEIDRHFIKEKLEAEMISFSFVRSELHSIIGWCWCDSSHLLHTHVSLSHICNKERSKAKASSFCFSIDTSQLIIKSYLENLATMTPDTNTLSYWLNWRFFICALFILLTMGLASFLIWKYEEFNKSRNERVEEGRRETVGLLYEDEAWNTCLKGIHPNWLLSYRIFSFLVLLGLLIANVAVDGGGIFFFYTQWTFALVTIYFALASCFSLYKTCFNHKKFEASAPDAERGTYVAPRLDGISDIPILSKSSDAYQESLSQNTAGVGGYTIQILFQTCAGASMLTDSVFWLVLYPFMTPKDFRLDIFTVGMHSVNAVLLLGETSLNCMSFPVFRFAYFILWTATFVIFQWIIHSVVSLWWPYPFLDLSSSYAPLWYLAVGIMHIPCYSVFALIVKLKHLWLSKLCPGACQFLR 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01455 539 PANTHER PROTEIN, PUTATIVE-RELATED 212 539 - -
Tsu05g01455 539 CDD RNase_HI_RT_Ty1 30 153 - -
Tsu05g01455 539 PANTHER UNCHARACTERIZED 212 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01455 Tsu-Chr5 13843246 13850543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01455 4 149 Receptor kinase-like Gene Family AT4G23160 36.242 9.47e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01455 - - gmx:100820116 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01455 05 13843246 13850543 Tsu05g01455 05 13843246 13850543 ECH
Tsu05g01455 05 13843246 13850543 Tsu05g01813 05 19563102 19564791 PCT