Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01448 ATGGAAGTTTTTTGGATACTTAGTTTGTTGCTTCATTTGCTGATGAAGATTTCTTCTGCTACTCTTTCTCCTTCTGGCATCAACTATGAagTTGTAGCTTTGATGGGTATAAAGACTGAGTTGAATGATCCTCACAATGTTTTGGAGAATTGGGATATTAATTCTGTTGATCCATGTAGTTGGAGGATGATTACTTGTACTTCAGATGGTTCAGTTTCTGCATTGGGATTGCCTAGTCAGAATTTGTCTGGCACATTATCTCCTAAAATTGGAAACCTTACTAATTTACAATCTGTGTTACTTCAGAATAATGCTATTTCCGGTCATATTCCATCTGCAATTGGAAGCTTGGAAAAGCTTCAGACACTTGATCTCTCTAATAATGAATTTAGTGGCGAGATGCCGAGTTCTTTGGGAGGCCTCAAGAATCTGAATTATTTGCGGTTAAATAATAACAGCCTTACAGGAGCTTGCCCTCAGTCTCTTAGCAACATCGAAAGCCTTACCCTTGTGGACCTCTCCTACAATAATTTGAGTGGTTCATTGCCAAGAATATCGGCAAGAACATTAAAGATTGTAGGTAACCCGCTAATTTGTGGTCCAAAAGAAAACAATTGTTCTACGGTATTGCCGGAGCCACTTTCCTTCCCGCCAGATGCATTAAAAGCCAAACCAGACGGTGGTAAAAAAGGGCATCATGTAGCACTTGCTTTTGGTGCAAGTTTTGGTGCCGCGTTTGTCATTGTGATTATAGTTGGGCTTCTCGTTTGGTGGCGGTATAGACACAATCAACAGATATTCTTTGATATTAATGAGCATTACGACCCAGAAGTGCGCCTTGGTCATCTAAAAAGGTATTCATTCAAAGAACTTCGGGCCGCAACTGACCATTTCAACTCAAAGAACATTCTAGGAAGAGGTGGTTTTGGAATAGTTTACAAGGCATGCTTGAATGACGGATCCGTTGTGGCCGTTAAACGGTTAAAGGACTATAATGCAGCTGGTGGTGAGATCCAATTTCAAACAGAAGTTGAGACCATAAGTTTGGCTGTCCACCGAAATCTTCTGAGGCTTCGAGGGTTTTGCAGTACTCAGAATGAAAGACTCCTTGTTTATCCATATATGTCTAATGGCAGTGTAGCCTCTAGATTAAAAGATCATATTCACGGTGAACCAGCTTTGGATTGGACAAGGCGGAAGAGAATAGCGTTAGGTACAGCAAGAGGGTTGGTTTATTTGCATGAGCAATGTGACCCTAAAATTATCCATCGCGATGTCAAAGCAGCCAACATATTGCTAGATGAAGAATTCGAAGCAGTTGTCGGTGATTTTGGTTTAGCTAAGCTTCTTGATCATAGAGATACCCATGTGACCACAGCCGTGCGTGGTACTATTGGTCACATTGCTCCTGAGTACCTATCCACCGGTCAGTCATCAGAAAAGACCGACGTGTTTGGATTTGGAATCTTGTTGCTTGAGCTTATTACAGGTCATAAGGCTCTAGATTTCGGTCGAGCGGCAAACCAGAAAGGCGTAATGCTTGATTGGGTTAAGAAACTACACCTTGAAGGAAAATTAAGTCAAATGGTAGATAAAGATCTCAAAGGCAACTTTGACATAGTTGAATTAGGAGAAATGGTTCAAGTAGCACTCTTGTGTACACAATTTAATCCTTCACATCGTCCAAAGATGTCCGAAGTGTTAAAGATGTTGGAAGGCGACGGTTTAGCTGAGAAATGGGAGGCATCACAGAGAATCGAAACACCAAGGTTTCGGTTTTGTGAAAATCCGCCTCAAAGATATTCAGATTTTATAGAAGAATCATCACTAATAGTAGAAGCGATGGAACTTTCTGGTCCTAGGTGA 1866 0.4105 MEVFWILSLLLHLLMKISSATLSPSGINYEVVALMGIKTELNDPHNVLENWDINSVDPCSWRMITCTSDGSVSALGLPSQNLSGTLSPKIGNLTNLQSVLLQNNAISGHIPSAIGSLEKLQTLDLSNNEFSGEMPSSLGGLKNLNYLRLNNNSLTGACPQSLSNIESLTLVDLSYNNLSGSLPRISARTLKIVGNPLICGPKENNCSTVLPEPLSFPPDALKAKPDGGKKGHHVALAFGASFGAAFVIVIIVGLLVWWRYRHNQQIFFDINEHYDPEVRLGHLKRYSFKELRAATDHFNSKNILGRGGFGIVYKACLNDGSVVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLRGFCSTQNERLLVYPYMSNGSVASRLKDHIHGEPALDWTRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLLDHRDTHVTTAVRGTIGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKGVMLDWVKKLHLEGKLSQMVDKDLKGNFDIVELGEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQRIETPRFRFCENPPQRYSDFIEESSLIVEAMELSGPR 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01448 621 Gene3D Ribonuclease Inhibitor 27 208 IPR032675 -
Tsu05g01448 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 3 621 - -
Tsu05g01448 621 SMART LRR_typ_2 93 116 IPR003591 -
Tsu05g01448 621 SMART LRR_typ_2 117 140 IPR003591 -
Tsu05g01448 621 SMART LRR_typ_2 141 164 IPR003591 -
Tsu05g01448 621 SMART LRR_typ_2 165 188 IPR003591 -
Tsu05g01448 621 SMART serkin_6 298 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01448 621 SUPERFAMILY Protein kinase-like (PK-like) 275 572 IPR011009 -
Tsu05g01448 621 Pfam Protein kinase domain 299 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01448 621 Gene3D Phosphorylase Kinase; domain 1 267 374 - -
Tsu05g01448 621 SUPERFAMILY L domain-like 28 197 - -
Tsu05g01448 621 Pfam Leucine rich repeat 94 154 IPR001611 GO:0005515
Tsu05g01448 621 PANTHER PROTEIN NSP-INTERACTING KINASE 3 3 621 - -
Tsu05g01448 621 Gene3D Transferase(Phosphotransferase) domain 1 375 590 - -
Tsu05g01448 621 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Tsu05g01448 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Tsu05g01448 621 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Tsu05g01448 621 ProSiteProfiles Protein kinase domain profile. 298 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01448 Tsu-Chr5 13749799 13754267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01448 63 621 Receptor kinase-like Gene Family AT1G60800 75.433 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Tsu05g01448 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01448 - - gmx:100806943 1104.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01448 05 13749799 13754267 Tsu05g01448 05 13749799 13754267 ECH