Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01444 ATGGAGGAAATGTACGGAGTACCATCAACGGTTGAATACGGCGGCGACAAATCACTTATCACACCGGAGAATCTAATTTTTCCTAATGACTACAACACTTTCCTCATGTCCACTTCATCCACAACCCGAATTCCTATGTTCGGATCCGACGATATCTTCACCACCGCAGCAGAACCTTCTTCCGCCGCAATTCACCACGACGTAACAACATCTACTGTTATGAAATCCAAAATCGCTTCTCATCCTTACTACCCCCGCCTCCTTCAAGCTTACATCGATTGTCAAAAGGTCGGTGCTCCTCCTGAAATCGCGCGTTTGTTAGAGGAAATTCGTCAAGAAAATGATCAAGTTAAAAGAGACGTAGTTGTTTCCACGTGTTTTGGAGCCGATCCCGAGCTTGATGAATTTATGGAAACTTACTGTGATATGCTTGTGAAGTATAAATCAGACCTTACTCGTCCTTTTGATGAAGCTACAACGTTTCTAAACAAGATCGAAAATCAACTTAGCCATCTCTGCACTGGTGCTTCAGTTCCAACTGCTTCTGATGATGGCGGTGCATCTTCGGAGGAAGAACTTAGTACGGGAGATGGTGAAGTTCAAGATGGACAATCAAGAGGAGAAGATCGTGAGCTCAAAGATAGGCTTCTACGGAAGTTTGGAAGTCATATTGGTACTTTGAAATTGGAAttttcaaagaagaaaaagaagggtaAGCTTCCAAAAGAAGCAAGACAAACACTACTTCAATGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGAAGCGGATAAGATTGAACTGGCGAAGACAACAGGGCTAGATCAGAAGCAAATTAACAATTGGTTTATAAATCAAAGAAAACGTCATTGGAAACCATCTGAGAATATGCAATTTTCTATGATGGAAAATTTTACCGGACGATTCCTTTCTGAAGAATGA 945 0.4106 MEEMYGVPSTVEYGGDKSLITPENLIFPNDYNTFLMSTSSTTRIPMFGSDDIFTTAAEPSSAAIHHDVTTSTVMKSKIASHPYYPRLLQAYIDCQKVGAPPEIARLLEEIRQENDQVKRDVVVSTCFGADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLNKIENQLSHLCTGASVPTASDDGGASSEEELSTGDGEVQDGQSRGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKTTGLDQKQINNWFINQRKRHWKPSENMQFSMMENFTGRFLSEE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01444 314 Pfam KNOX2 domain 127 173 IPR005541 GO:0003677|GO:0005634
Tsu05g01444 314 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 36 313 - -
Tsu05g01444 314 SMART KNOX1_2 72 116 IPR005540 GO:0003677|GO:0005634
Tsu05g01444 314 SMART ELK_2 211 232 IPR005539 GO:0003677
Tsu05g01444 314 MobiDBLite consensus disorder prediction 176 212 - -
Tsu05g01444 314 SMART KNOX2_2 123 174 IPR005541 GO:0003677|GO:0005634
Tsu05g01444 314 ProSiteProfiles 'Homeobox' domain profile. 231 294 IPR001356 GO:0003677
Tsu05g01444 314 Pfam KNOX1 domain 74 115 IPR005540 GO:0003677|GO:0005634
Tsu05g01444 314 ProSitePatterns 'Homeobox' domain signature. 269 292 IPR017970 GO:0000981|GO:0006355
Tsu05g01444 314 SMART HOX_1 233 298 IPR001356 GO:0003677
Tsu05g01444 314 SUPERFAMILY Homeodomain-like 232 305 IPR009057 -
Tsu05g01444 314 CDD homeodomain 243 295 IPR001356 GO:0003677
Tsu05g01444 314 ProSiteProfiles ELK domain profile. 211 231 IPR005539 GO:0003677
Tsu05g01444 314 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 36 313 - -
Tsu05g01444 314 Pfam Homeobox KN domain 251 290 IPR008422 GO:0003677|GO:0006355
Tsu05g01444 314 Pfam ELK domain 211 232 IPR005539 GO:0003677
Tsu05g01444 314 Gene3D - 230 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01444 Tsu-Chr5 13663993 13676274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01444 1 314 Homeobox Transcription Factor Family AT1G23380 65.152 1.11e-143 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Tsu05g01444 KNOX2 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01444 - - gmx:100794719 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01444 05 13663993 13676274 Tsu05g01444 05 13663993 13676274 ECH