Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01442 atgaagaaaacagTCCCTCTCATCTTTTCTCAGTGTCTCAAACTTCTTCTCATCAAGTTTGTATTACTATCAGAAACTATAATTGCAGAACCAAGAACCAAGACAGTTATGATAACTTGTGGCAATCAACTAGAGCACAACACAAGCatctttgtttcaaattttgttgCAACTATGGAGAAGATTAGCGAGAAGATGCGCAGTGCCGGCTTCGGCACAGCAGTTACAGGGACAGGACCTGATGATAACTATGGCCTAGCACAATGCTATGGAGATCTTTCGTTACTCGACTGTGTGTTGTGTTATGCCGAGGCGCGCACGGTTCTTCCTCAGTGCTTCCCTTATAATTCCGGTCGGATTTACCTCGATGGTTGTTTCATGAGGTCTGGGAATTATAGTTTCTTTAATGAGTATAAAGGACCAGAAGATAGAGCTGTATGTGCAAACACAACTAAGAAGAACTCTGGTTTTCAAGCAGCAGCAAAGCAAGCAGTGTTGACAGCAGTTCAAGATGCGCCAAACAATAAAGGATATGCTAGGGGGAAAGTTTCTGTAACAGGAACAACAAATGAATCTGCTTACGTTCTGGCTGATTGTTGGAGGACCTTGGATTCTAGGTCTTGCAAAGCATGTCTTGAGCATGCATCTTCTTCTATATTGGGATGCTTGCCCTTCTCAGAAGGAAGGGCGCTCAACACCGGATGCTTCATGAGGTACTCTGACACTGATTTTCTTAACAAGGAAGTAGAAAATGAGAGTTCAAGAGGTAATGTGGTAGTGATAGTGGTTGCAGTAGTCAGTTCGGTGGTCGTTGCAGTGGTTGGAGTGACCATTGGAGCATATATCTGGAAACAAAGatacattcaaaagaaaagaagagGATCAAATGATGCAGAAAAGTTAGCAAAGACTCTTGAACAAAAAAGCTTGAACTTCAAGTACTCTACATTGGAAAGAGCTACTGAATCTTTTAATGACAATAACAAGTTAGGCCATGGAGGATTTGGCACGGTTTATAGAGGAGTTCTACTTGATGGAAGAGAGATTGCTATCAAGAGGTTATATTACAATAACAGACAACGAGCAGCAGATTTCTACAACGAAGTCAACATAATTAGCGGCGTTGAACACAAGAATCTAGTTAGACTATTAGGTTGCAGTTGTTCAGGACCTGAAAGCCTGCTTGTTTACGAATATATGCACAACAGAAGTCTTGAtcgcttcatttttgATAAAAACAAGGGCAGAGAACTAAATTGGGAAAAGAGATGTGAAATAATTATCGGGACAGCTGAAGGATTAGTTTACCTTCATGAGAACTCCAAAATCAGGATAATTCATAGAGATATAAAAGCCAGCAATATTCTATTGGATTCAAAGCTTCGAGCGAAAATTGCAGATTTTGGTTTGGCCAGATCCTTTCAAGAAGACAAGAGCCACATAAGTACCGCTATTGCGGGAACTTTGGGGTATATGGCTCCAGAATATATAGCTCATGGTCAGTTAACAGAAAAAGCAGATGTATATAGTTTTGGAGTATTACTGCTAGAGATAGTTACCGGAAGACAGAACAACAGGAGCAAAGCATCAGAATATTCAGACAGCTTAATTATAGTGGCATGGAACCATTTTCAGTCAGGGACTGCCGAACAGTTATTTGATCCAAATATAGCATTGCACAACAGCTTCGATAGCAATGTTAAGAATGAGATTTTAAGAGTGTTTCATATAGGACTTCTATGCATCCAAGAGGTTGCTTCATTACGACCAACTATGTCAAAGACGTTACAGATGTTAACCGAAAATGAGGAGCATCTTGTTGCTCCATCTAATCCACCCTTCTTAGATGAGAGTACCATGGAACTCCATGAGACAGGTGGTGACCCATTTTACCTCCCCAAAACAGCTGATTCAGTTGCTACTATGTCCCATAGTTCTTTCTATCCCAGGTGA 1953 0.3958 MKKTVPLIFSQCLKLLLIKFVLLSETIIAEPRTKTVMITCGNQLEHNTSIFVSNFVATMEKISEKMRSAGFGTAVTGTGPDDNYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNSGRIYLDGCFMRSGNYSFFNEYKGPEDRAVCANTTKKNSGFQAAAKQAVLTAVQDAPNNKGYARGKVSVTGTTNESAYVLADCWRTLDSRSCKACLEHASSSILGCLPFSEGRALNTGCFMRYSDTDFLNKEVENESSRGNVVVIVVAVVSSVVVAVVGVTIGAYIWKQRYIQKKRRGSNDAEKLAKTLEQKSLNFKYSTLERATESFNDNNKLGHGGFGTVYRGVLLDGREIAIKRLYYNNRQRAADFYNEVNIISGVEHKNLVRLLGCSCSGPESLLVYEYMHNRSLDRFIFDKNKGRELNWEKRCEIIIGTAEGLVYLHENSKIRIIHRDIKASNILLDSKLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYIAHGQLTEKADVYSFGVLLLEIVTGRQNNRSKASEYSDSLIIVAWNHFQSGTAEQLFDPNIALHNSFDSNVKNEILRVFHIGLLCIQEVASLRPTMSKTLQMLTENEEHLVAPSNPPFLDESTMELHETGGDPFYLPKTADSVATMSHSSFYPR 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01442 650 Gene3D Transferase(Phosphotransferase) domain 1 400 610 - -
Tsu05g01442 650 CDD STKc_IRAK 330 601 - -
Tsu05g01442 650 ProSiteProfiles Protein kinase domain profile. 324 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01442 650 Pfam Salt stress response/antifungal 46 131 IPR002902 -
Tsu05g01442 650 Pfam Salt stress response/antifungal 147 241 IPR002902 -
Tsu05g01442 650 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 9 631 - -
Tsu05g01442 650 Pfam Protein tyrosine and serine/threonine kinase 327 524 IPR001245 GO:0004672|GO:0006468
Tsu05g01442 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Tsu05g01442 650 Coils Coil 288 308 - -
Tsu05g01442 650 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Tsu05g01442 650 ProSiteProfiles Gnk2-homologous domain profile. 33 134 IPR002902 -
Tsu05g01442 650 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 9 631 - -
Tsu05g01442 650 SUPERFAMILY Protein kinase-like (PK-like) 308 621 IPR011009 -
Tsu05g01442 650 Gene3D - 32 134 IPR038408 -
Tsu05g01442 650 Gene3D - 144 244 IPR038408 -
Tsu05g01442 650 Gene3D Phosphorylase Kinase; domain 1 284 399 - -
Tsu05g01442 650 SMART serkin_6 324 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01442 650 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01442 Tsu-Chr5 13653021 13655865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01442 1 650 Receptor kinase-like Gene Family AT1G70520 65.544 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu05g01442 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01442 - - gmx:100305420 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01442 05 13653021 13655865 Tsu05g01442 05 13653021 13655865 ECH