Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01433 ATGGCTTCTTTAATTCATCAACTTctttcactttttcttctttttctagcATTTTCATTAACAATTGTTTTTTCTATTGaattttcaatcaaaaaatCTTACATGGAACCTTTTAAATGTTCTACTAAGATCAAAACATGCAATGCATCACTCTACCACATAAACTACAATCACAACATAGAACAAATAGCAAATTTTTATTCAGTTGATTCTTCCCAAATCAAACCGATTATCCGTAACGCAAAACAAGATTACCTTATAAAAGTACCTTGTTCTTGCAAAAACACCAATGATCTTAGTGGTTATTTCTACGATACAATCTATACCGCGAGGCATAATGAAAGTTTTGTCGATGTTAAGAATCTTGTTTATAGTGGTCAAACATGGCAAGACGGCGAAGATTTGGTTGCAAATGAGAATGTAACAATACATATTCCTTGTGGATGTTCTGAATTTGAGTCTGAAATTGTTGTTACATATACTGTTCAGCAGAATGATACACCAACATCAATTTCTCTTTTGCTTAATGCTACTGTTTATGGCATTGCGAGAATGAACCAAATTTTGGTTGCTAACCCTTCCTTCATAGATATTGGTTGGGTTTTATATGTTCCCGACGAGGAATTAAAACGGTCTTCACATTCCAATCGAAAAGAAAAGAAACACAAGTGGGTGATAATTATTGGTATCCTATTGAGTGTGACATTACTTTCAGTTATTACTGTGATTGTTCTCATTCTTAGGAGAAATAAAGCTTATCCAACAAGCAAAAGTGATCCAAAAACTTTCTCTAAAAGATCATTAGCAAATAGAACTATTTCATTAAGAAATCATGAATTTCATAAAGAATATATGGAAGatgcaacacaatttgagtcaGAAAGACCAGTGATTTATGATTTTGAGGAGATTGAAGTTGCTACAAATAATTTTGATGAAACTAGAAGAATTGGAGTTGGTGGATATGGTACTGTCTATTTTGGAATGCTAGAAGATAAAGAAGTTGCTGTAAAGAAAATGAAGTCTACCAAATCCAAAGAGTTCTATGCAGAACTCAAAGCCTTATGCAAGATCCATCACATTAACATTGTGGAATTGTTAGGATATACAAGTGGAGATGATCATCTTTATTTGGTTTATGAGTATGTTCCTAATGGATCTCTAAGTGAACACCTTCATGATCCACTATTGAAAGGTCACCAACCTCTTTCGTGGTGTGCTAGAGCTCAAATTGCACTTGATTCAGCAAAAGGTATTGAATACATACACGATTACACGAAAGCGCGATACGTGCACCGTGATATAAAGACTAGTAATATTCTTCTTGATGAGAAGTTGAGAGCAAAGGTAGCTGATTTTGGACTTGCAAAGTTAGTAGAAAGAACCAACGATGAAGAATTCTTAGCTACAAGGCTTGTCGGAACACCAGGCTACCTTCCACCAGAGTCTGTGAAGGAGCTTCAAGTGACAATAAAAACTGATGTATTTGCATTTGGAGTGGTTCTGTCTGAGTTGATAACAGGAAAACGTGCATTATTTCGTGACAATAAAGAAGCCAATAATATGAAATCACTTATTGCAGTTGTTAACAAAATATTTCAAGATGATGATCCGGTGACTGCTTTAGAAGCTGTTGTAGATGGAAATCTTCAACGTAATTACCCTATTGAAGATGTCTACAAGATGGCAGAACTATCACATTGGTGCTTGAGTGAAAATCCAGTGGACAGACCAGAAATGAAAGAAACAGTAATAGTATTATCAAAGATTGTAATGTCATCAATAGAATGGGAAGCTTCACTTGGTGGGGACAGCCAAGTTTTCAGCGGTGTATTTGATGGAAGATGA 1848 0.3393 MASLIHQLLSLFLLFLAFSLTIVFSIEFSIKKSYMEPFKCSTKIKTCNASLYHINYNHNIEQIANFYSVDSSQIKPIIRNAKQDYLIKVPCSCKNTNDLSGYFYDTIYTARHNESFVDVKNLVYSGQTWQDGEDLVANENVTIHIPCGCSEFESEIVVTYTVQQNDTPTSISLLLNATVYGIARMNQILVANPSFIDIGWVLYVPDEELKRSSHSNRKEKKHKWVIIIGILLSVTLLSVITVIVLILRRNKAYPTSKSDPKTFSKRSLANRTISLRNHEFHKEYMEDATQFESERPVIYDFEEIEVATNNFDETRRIGVGGYGTVYFGMLEDKEVAVKKMKSTKSKEFYAELKALCKIHHINIVELLGYTSGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARAQIALDSAKGIEYIHDYTKARYVHRDIKTSNILLDEKLRAKVADFGLAKLVERTNDEEFLATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLSELITGKRALFRDNKEANNMKSLIAVVNKIFQDDDPVTALEAVVDGNLQRNYPIEDVYKMAELSHWCLSENPVDRPEMKETVIVLSKIVMSSIEWEASLGGDSQVFSGVFDGR 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01433 615 SMART serkin_6 311 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01433 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Tsu05g01433 615 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 21 615 IPR044812 GO:0019199|GO:0045087
Tsu05g01433 615 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Tsu05g01433 615 ProSiteProfiles LysM domain profile. 158 204 IPR018392 -
Tsu05g01433 615 Pfam Protein kinase domain 312 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01433 615 ProSiteProfiles Protein kinase domain profile. 311 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01433 615 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 21 615 - -
Tsu05g01433 615 Gene3D Phosphorylase Kinase; domain 1 289 382 - -
Tsu05g01433 615 Gene3D LysM domain 154 219 IPR036779 -
Tsu05g01433 615 SMART LysM_2 159 205 IPR018392 -
Tsu05g01433 615 SUPERFAMILY Protein kinase-like (PK-like) 295 585 IPR011009 -
Tsu05g01433 615 SUPERFAMILY LysM domain 158 205 IPR036779 -
Tsu05g01433 615 Gene3D Transferase(Phosphotransferase) domain 1 383 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01433 Tsu-Chr5 13562937 13567368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01433 291 615 Receptor kinase-like Gene Family AT1G51940 52.266 1.25e-117 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Tsu05g01433 Pkinase 8.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01433 - - gmx:100800907 880.552