Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01409 atgacAACCAGATTCAAGAAGAACAGGAAGAAGCGCGGCCACGTCAGCGCCGGACACGGTCGTATCGGAAAACACAGAAAGCATCCTGGAGGTCGTGGTAACGCCGGAGGTATGCATCACCACCGGATCCTCTTCGACAAGTATCATCCAGGTTACTTCGGTAAAGTTGATGTTAAGGAAAAAGCTGCTAAGTCTAAGAACACTGCACCTGTTGTTGATGTTACTCAGCTTGGTTTTTTTAAGGTTCTTGGTAAAGGTGTTTTGCCTAGCAATCAGCCTCTTGTTGTTAAAGCTAAGTTGATTTCTAAGATTGCTGAAAAGAAGATTAAGGAAGCTGGTGGTGCTGTTGTTCTTACTGCTTag 363 0.4408 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVDVKEKAAKSKNTAPVVDVTQLGFFKVLGKGVLPSNQPLVVKAKLISKIAEKKIKEAGGAVVLTA 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01409 120 MobiDBLite consensus disorder prediction 1 35 - -
Tsu05g01409 120 ProSitePatterns Ribosomal protein L15 signature. 81 113 IPR001196 GO:0003735|GO:0005840|GO:0006412
Tsu05g01409 120 Hamap 50S ribosomal protein L15 [rplO]. 1 119 IPR030878 GO:0003735|GO:0006412|GO:0015934
Tsu05g01409 120 Gene3D - 38 120 - -
Tsu05g01409 120 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 58 - -
Tsu05g01409 120 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 57 120 - -
Tsu05g01409 120 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 29 117 IPR021131 -
Tsu05g01409 120 SUPERFAMILY Ribosomal proteins L15p and L18e 6 119 IPR036227 -
Tsu05g01409 120 MobiDBLite consensus disorder prediction 1 38 - -
Tsu05g01409 120 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 58 - -
Tsu05g01409 120 PANTHER 60S RIBOSOMAL PROTEIN L27A 57 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01409 Tsu-Chr5 13355565 13356011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01409 1 120 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 69.863 2.94e-64 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01409 K02900 - ini:109180074 200.675