Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01408 ATGGTGATATGCTCTATATTAGCAGCGGTCATGCTACGCTATGGATGGTACCAGAAGAAGGCAGCAAGGTTGATCCAAGAAGTCAATGCTTCTGCTAATAATGTAGCTCAAGAGACATACTCTCTTATTAGAACTGTTCGAGTTTATGGAaccgaagaagaagaacatgGAAGatacaaatggtGGCTGGAAAAATTAGCTGACATAAGCTTACGACAAAGTGCTGCATATGGATTTTGGAATTTTAGCTTCAACACTCTTTATCATTCAACTCAGATTATTGCCGTGCTATTTGGAGGAATGTCTATTCTTGCGGGTCAAATTACAGCAGAGAAACTCACTAAGTTTATACTATACAGTGAATGGTTAATTTATTCAACCTGGTGGGTAGGAGACAACGTATCCAATTTGATGCAGTCAGTTGGAGCTAGTGAAAAAGTGTTCAACTTAATGGATCTCTCACCTAGCAGCCAATTCATAACAAGAGGAATGAAGTTGCAAAGTTTAATGGGACATTTGGAGTTTGTAAATGTATCTTTTCACTATCCTTCAAGGCCAACGGTATCTGTAGTTCAACATGTAAACTTTGTTGTCAATCCTGGTGAGGTGGTTGCCATTGTTGGTCTTAGTGGTAGCGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTACAAGTGGTCAGATTTTGGTAGATGGTGTCCCTCACAAAGACTTGGATGTCATGTGGTGGAGAGAGAGAATCGGATATGTGGGACAGGAACCGAAGCTATTCCGGATGGATATTAGCTCGAACATCAGATATGGATGTACCCGAGATGTAAAGCAGGAGGATATTGAGTGGGCTGCGACACAGGCCTATGCTCATGACTTTATATCAGCACTTCCTAATGGTTATGAAACACTTGTTGATGACGATCTTTTAAGTGGCGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCATTCTTAGGGACCCAAAAATATTGATCCTTGATGAAGCCACTAGTGCACTGGATGCCGAAAGTGAACATAATGTGAAGGGTGTTCTTCGATCAGTTAGAAGTGATTCTTCATCAAGGAGAAGTGTCATAGTCATTGCACACAGGCTCTCTACCATACAAGCTGCGGACAGGATTATTGTAATGGATAGGGGTCAAATTGTTGAGGATGGAAGTCACAGGGAACTTCTCTTGAAAGACGGTTTATATGCTCGGTTGACTAGAAAACAAGCTGATTCTATGGAATGA 1257 0.4065 MVICSILAAVMLRYGWYQKKAARLIQEVNASANNVAQETYSLIRTVRVYGTEEEEHGRYKWWLEKLADISLRQSAAYGFWNFSFNTLYHSTQIIAVLFGGMSILAGQITAEKLTKFILYSEWLIYSTWWVGDNVSNLMQSVGASEKVFNLMDLSPSSQFITRGMKLQSLMGHLEFVNVSFHYPSRPTVSVVQHVNFVVNPGEVVAIVGLSGSGKSTLVNLLLRLYEPTSGQILVDGVPHKDLDVMWWRERIGYVGQEPKLFRMDISSNIRYGCTRDVKQEDIEWAATQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSSSRRSVIVIAHRLSTIQAADRIIVMDRGQIVEDGSHRELLLKDGLYARLTRKQADSME 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01408 418 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 139 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu05g01408 418 SMART AAA_5 200 389 IPR003593 -
Tsu05g01408 418 Pfam ABC transporter transmembrane region 2 124 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu05g01408 418 Gene3D ABC transporter type 1, transmembrane domain 2 170 IPR036640 GO:0005524|GO:0016021
Tsu05g01408 418 Gene3D - 171 414 IPR027417 -
Tsu05g01408 418 PANTHER ABC TRANSPORTER B FAMILY 1 417 - -
Tsu05g01408 418 ProSitePatterns ABC transporters family signature. 311 325 IPR017871 GO:0005524
Tsu05g01408 418 SUPERFAMILY ABC transporter transmembrane region 2 153 IPR036640 GO:0005524|GO:0016021
Tsu05g01408 418 PANTHER ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC 1 417 - -
Tsu05g01408 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 413 IPR027417 -
Tsu05g01408 418 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 173 412 IPR003439 GO:0005524
Tsu05g01408 418 Pfam ABC transporter 192 339 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01408 Tsu-Chr5 13339765 13349136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01408 147 418 Calmodulin-binding Proteins AT2G36910 46.570 1.25e-66 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01408 - - gmx:100775951 723.005