Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01401 ATGGTTATGAAACACTTTGATGCCGATCTTTTAAGTGGCGGACAAAAGCAGCGAATTGCTATCGCTAGGGCCATTCTTAGGGACCCAAAAATACTGATCCTTGATGAAGCCACTAGTGCACTGGATGCCGAAAATGAACATAATGTGAAGTGCTTTCGTAGAAGTGATTCTTCATCAAGGAGAAGTGTCATAGTCATTGCATTCAGGCTCTCTACCATACAAGCCGCGGACAGGATTATTGTGATGGATAGGGGTCAAATTGTTGAGGCAAAGGACATGTATATCACCTATGGCATTGGAAACATCATGCCAACACGCACAAATGACATAAAGGTGACCACCAATTTGTTTTCTGATGATTCTGTTTCCGTCAACCATAAAAGCACCAGCAGTTATATATGTCTAAATGAGACAGAAGGAAACAGTTTCCTCTTAAAACACACAAATAAAGATTCACACTCCATTTTCACAATCAACTTTGCTGCTGTTAAAAGAGGATTCATTCTTCAACCAAGAGATGAATCTAGTAGTCTTAGTGGTGCGCCATCGAAGGTGAGTGCTTTGGCGTGGCAATTGCTGCTGAATAGAATTCTGACTAGGGATAATTTGTGCTATAGAGGTATTATCGGTACAGCGGAGGCTAGTTGCCCTTTGTGTGGAGGTGTTGTTGAGACGTCGAGGCACCTGTTCCTGCATTGTAATTTCGCTGCTGGAATATGGTATGCTTTATCGAGATGGTTGGGGGTGGTGGCTGTGCTCCCTCCTAATGTTTCTTCGTCATATGCGGTGTTGGTCGGTTGGGGCTCTAATAGTAAGCGTAAAAAAGGCTTTTCAATTGTTTGGCTGGCTTTTGTGTGGGCTATTTGGAAGGCTAGGAATGATCGTGTCTTTAATAATAAGGTGATTAACGGGTCAGAGGTGGTGGATTTTATCCAACCACAAGAGTTGAATTCGTCCTTCCATTGTGCGGTTACTGGAGAAGTTGGTTGTGCAGACCTCACTGGTTTAGGAGGTGTGATGGTTGAGAGGACGGTAAAGGAACATTATCATCAACTTGACATTAATATTAAGAGAAGAGTGACTAAAGGTATCCTTATGCCAAAAAGGAAAGCTGACATTTCTGATTCTTGGAGGCGAAGttctaaaatacaatcatcTGTTCTTATAGAGGTTCCTTGGCATCTGGATGATGGGACTGGTCGTGTGGCTGTTGATGGAGCTGATAGTGCTGATTTTGAAGTACCTTTTCTGTCATCTTTGACAATTCGTTATGGGCCGCATCGGACACCTGTGCATTACCCATATTCCACAAGATCATCATTCGAAGACTGGGATCGGGCACTGATACATGAAACAGAGGATTGTATTCAAGTTTCAAAGATCATTGCATTGGAGATGATTGAACGGGCACTTCCAGTTCAAACATTCTTGACTGTTGTTGGCCAGGTCACTAACACCAATGCTGGTCTTACAATTGGTCGATCTGGCGAATGGCCATTGCTTATTTCCCAATTAACCATCGATGAACAGATTGCAAATTTGGTGAATTTTGAAAGGTGGCCTGAGAGAGCTTGGCTGGGCCTGACAGTGTGTTGTGCAGCCATATATATCATCTGTTACATTTCAGAGGACGGCATTGCAGCGAACTGTGCACCAGATGAGGAAATTTTTGGTTCTAGAAAAAGTATTGAGAATGTGAATATTGTGCAGTCGGAAGCCGGAATAGAAGAAGCACCGAATATAGTGAGTTCAAGGATGCAGCTTATTGTTTCAATTGCTTTCTCTTTAAATGAGATTGTGCGTGATCCGGGTCTTAGGAAACAAATTCATGAGTATGCTCCGGATATTCAAGATCAAATTAGGAGGGCATATATATTGAAGGGTCCAACGCaaccaattttggaaaaatttccTCGTACTCAATTTGCAAGAGAGAACCATGAACAAGAGCATTTTGTAAATCATGATTGTTCAAGATTTCTCATAGCACAAGGGATGACTTTCCGTGGCCATAATGAATCCATTACTTCTCTAAACAATGTCAATTTTAGAGAGATGATAGATTGGGTAAAATCTAATAATGAACAAGTGAGAGATTCTTTTGACCGTGGTTTACAATCTTGTATAATGATTTGCGGTGACATTCAAAAACAATTTGCAACGTCTTGTGCACATGAAGTTAGCAAGGTGGTTATGGAAGAGCTTGGTGATAGACAATTCTCCGTGCTTATTGATGAGTCTCGTGATATATCCGTCAAAGAACAAATGGCGGTGATGTTTAGGTTTGTGAACGACAAAGGGGAAGTTGTGGAACGATTTCTTCCTCTACAACATGTCAAAGATACTACATCTAATGCACTAAAGGATGCTCTTTATAGTATTATTGATCGTCACATGCTATCTATTTCGAGGTTAAGAGGGCAAGGATATGACGGGGCTTCAAATATGAGAGGTGAATTTAATGGTTTGCAAAGAAAGATTCTAGATGAAAACCCTTATGTTTTATATGTCCATTGTTATGTTGACCGTTTGCAATTGGTGGTTGTGTCCGTTGCTAGTAGTTGCTCATCTATTCATGATTTCTTTGAGTACATCTCCTTGATTGTAACCACAACAAGTGCATCTTGCAAGAGAATGAATGCTTTGAAGGAGgcacaacacaaagatattttGGACAAACTTGAAAGTGGTGAGATATCTAAAGGAAAGGGTTCGCACCAACAATCTAGTCTCGCTAAAGTCGGCGATACTAGATGGGGTTCACATCATACTTCCTTGATTCGTTTGGATCAAATGTGGTCCTCTGTGTTATATGTGCTTAGTACAGTTGATGAGCTTGGACGTGCACCATCTCAAGCGGCGGGTTTGATAGAAAAAATGGAGAGTTTTAAATTTGCTTTCATTTTGAAGTTAATGTTAAAGTTGTTTGATATCACAAATGAGCTTTCAAGAATCTTGCAAAGAAAAGATCTTAATATTGTGCTTGCCATGGAATTAGTTGATGATGTCAAAGATCGGTTGGCCACATTGAGAGAGAGTGGTTGGGGTTTAGACCATGAGGATTGA 3066 0.4025 MVMKHFDADLLSGGQKQRIAIARAILRDPKILILDEATSALDAENEHNVKCFRRSDSSSRRSVIVIAFRLSTIQAADRIIVMDRGQIVEAKDMYITYGIGNIMPTRTNDIKVTTNLFSDDSVSVNHKSTSSYICLNETEGNSFLLKHTNKDSHSIFTINFAAVKRGFILQPRDESSSLSGAPSKVSALAWQLLLNRILTRDNLCYRGIIGTAEASCPLCGGVVETSRHLFLHCNFAAGIWYALSRWLGVVAVLPPNVSSSYAVLVGWGSNSKRKKGFSIVWLAFVWAIWKARNDRVFNNKVINGSEVVDFIQPQELNSSFHCAVTGEVGCADLTGLGGVMVERTVKEHYHQLDINIKRRVTKGILMPKRKADISDSWRRSSKIQSSVLIEVPWHLDDGTGRVAVDGADSADFEVPFLSSLTIRYGPHRTPVHYPYSTRSSFEDWDRALIHETEDCIQVSKIIALEMIERALPVQTFLTVVGQVTNTNAGLTIGRSGEWPLLISQLTIDEQIANLVNFERWPERAWLGLTVCCAAIYIICYISEDGIAANCAPDEEIFGSRKSIENVNIVQSEAGIEEAPNIVSSRMQLIVSIAFSLNEIVRDPGLRKQIHEYAPDIQDQIRRAYILKGPTQPILEKFPRTQFARENHEQEHFVNHDCSRFLIAQGMTFRGHNESITSLNNVNFREMIDWVKSNNEQVRDSFDRGLQSCIMICGDIQKQFATSCAHEVSKVVMEELGDRQFSVLIDESRDISVKEQMAVMFRFVNDKGEVVERFLPLQHVKDTTSNALKDALYSIIDRHMLSISRLRGQGYDGASNMRGEFNGLQRKILDENPYVLYVHCYVDRLQLVVVSVASSCSSIHDFFEYISLIVTTTSASCKRMNALKEAQHKDILDKLESGEISKGKGSHQQSSLAKVGDTRWGSHHTSLIRLDQMWSSVLYVLSTVDELGRAPSQAAGLIEKMESFKFAFILKLMLKLFDITNELSRILQRKDLNIVLAMELVDDVKDRLATLRESGWGLDHED 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01401 1021 PANTHER GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN 660 1015 - -
Tsu05g01401 1021 SUPERFAMILY Ribonuclease H-like 737 1001 IPR012337 -
Tsu05g01401 1021 Pfam ABC transporter 9 39 IPR003439 GO:0005524
Tsu05g01401 1021 PANTHER OS02G0301400 PROTEIN 660 1015 - -
Tsu05g01401 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 90 IPR027417 -
Tsu05g01401 1021 PANTHER OS02G0301400 PROTEIN 598 642 - -
Tsu05g01401 1021 Pfam zinc-binding in reverse transcriptase 180 240 IPR026960 -
Tsu05g01401 1021 Pfam Domain of unknown function (DUF4371) 654 822 IPR025398 -
Tsu05g01401 1021 PANTHER GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN 598 642 - -
Tsu05g01401 1021 Gene3D - 10 90 IPR027417 -
Tsu05g01401 1021 Pfam E3 Ubiquitin ligase 373 520 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01401 Tsu-Chr5 13211055 13229482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01401 305 530 C3H Transcription Factor Family AT1G63900 28.936 3.74e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01401 - - gsj:114393509 651.358