Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01395 ATGTTCGGACTCTCCCAACCCGCTTCGGATACTCCCAAATCCACCATCAAATTCCTCTGTAGTTACGGCGGCAAAATCCTCCCCCGCTACCCCGACGGCAAACTCCGTTACCTCGGCGGCCATACACGTGTCCTCTCTGTCGATCGCACTATTCAATTTTCCGAACTGATTTCGAAGCTGGAAGAACTCTGCGGTTCATCCGTGACGCATCTTCGCTGTCAGTTACCGGCCGAAGATCTCGACGCTTTGGTTTCGATTACCTCCGATGAGGATCTCGTCAATCTAGCCGAAGAGTACGATCGCACTGCATCGCCGCAATTACCGTTGAAGATCAAAGCGTTCATTTCACCTCCGAGATCTTCAAACAAGGTTTCCAAACCTCCACTACCGTCTCTGTCAAAATCAGCCTCtgtttcttcatcatcctctgtATCGTCGACATCTTCTTCTTCGTCATATTGTAGCCTTACCGGTGGAGGTTCTAGCCGGAAGTATGCGGCGGAGCCGCCAGTAGCTTACCGTTGCGTTCATCAGATGTCGTCTCCAACGGCTAATCATGTCAACATGGAGAGATCTTCCAGGAGGAATATTCCCCTGCACGGCAACTGCAACCAGTGGCAATAA 624 0.4968 MFGLSQPASDTPKSTIKFLCSYGGKILPRYPDGKLRYLGGHTRVLSVDRTIQFSELISKLEELCGSSVTHLRCQLPAEDLDALVSITSDEDLVNLAEEYDRTASPQLPLKIKAFISPPRSSNKVSKPPLPSLSKSASVSSSSSVSSTSSSSSYCSLTGGGSSRKYAAEPPVAYRCVHQMSSPTANHVNMERSSRRNIPLHGNCNQWQ 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01395 207 PANTHER OS05G0427100 PROTEIN-RELATED 9 198 - -
Tsu05g01395 207 SMART PB1_new 30 118 IPR000270 GO:0005515
Tsu05g01395 207 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 9 198 - -
Tsu05g01395 207 Pfam PB1 domain 32 110 IPR000270 GO:0005515
Tsu05g01395 207 MobiDBLite consensus disorder prediction 118 153 - -
Tsu05g01395 207 Gene3D - 34 113 - -
Tsu05g01395 207 CDD PB1_UP2 19 115 - -
Tsu05g01395 207 SUPERFAMILY CAD & PB1 domains 32 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01395 Tsu-Chr5 13052466 13053855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01395 16 115 MAP Kinase Kinase Kinase AT5G57610 50.000 4.45e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01395 - - gmx:100815157 225.713