Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01392 ATGGAAGAAGCACTTCACCGTCTCAACGGAACTTCTCCAACAATCCCATTCCCAGACCTACTCGaaccaacaaaaaaaccaacaacaaaaagaacATCACGcgacaacacaacaacaaccCCAACCGGCAACGGCGGCGCACTTCGTTACCGTGGAGTACGCCGTCGTCCATGGGGTCGTTACGCAGCTGAAATAAGAGACCCACAGTCAAAAGAACGCCGCTGGTTAGGAACTTTCGACACAGCTGAAGAAGCAGCTTGTGCTTATGACTGTGCCGCACGTGCCATGCGTGGTGTTAAAGCTCGCACGAATTTCGTTTACCCAACTCCACCACACACCACCACTTTCCCTTCTTTCAACTTCCCAAAACATTCTCAAACTAACCGCCACGTGTCAACTTGTAGTTGGTCtgaacaacaacaaactcataCTGCTGTTGATTTTTCTCATAACAGAAacccttcatcttcttcttcttcttcttcttcacttgaTATGCTTCTGTTTCGTGATTTCATCAACTCTTCAAATTCTAACTCTTCAAATCATCATTTCCATGACAATTCTCCTTATTCTTGTAACAACAAAGGTTGTTCTATTTCTAGTTCTATTTCAAATTCTAGTTCTGCTTTTCTACCTGGTTGTTGTTTGGTGAATTCTTGTggagggggtgcaaatagcaactTGAGCAACATGAACAACAATGCTTTTGGTGGTGTAGATGGGAATAATGGGAACAAACTTTCTGCTGCTGATGAAGATTCAGAGTTTTTTCCTAAAGAATCTTCTGATTCTGGTTTATTGGAAGAGATTGTGAATAAGTTTTTACCTAAACCTAAGAAAGAGATTAAAACTGAGTTTTTGCCACAGACAGTGACTTTATCTGACCCTTTTGTTTCAACTGCATCTGTGTATGATCAAATGCTTGAGATGAAAAAAGGGGTTACAAAGAATGAATTTTTAGGTGTTGGGTTTGATCAGAATGGTTTCAATATGCAGCAGTATGAGAATTTCAATAATGGGGTTTTTCATCAGTCTCTGCCTGCTGGGAATGATCAGATCATGGTGAATTATGCTGAGAATTCTGCTATTCAGTATCAAGAGTATCTTAATGCTTTTGCACTTAGGATGCAAAATGCTTAA 1143 0.3622 MEEALHRLNGTSPTIPFPDLLEPTKKPTTKRTSRDNTTTTPTGNGGALRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGVKARTNFVYPTPPHTTTFPSFNFPKHSQTNRHVSTCSWSEQQQTHTAVDFSHNRNPSSSSSSSSSLDMLLFRDFINSSNSNSSNHHFHDNSPYSCNNKGCSISSSISNSSSAFLPGCCLVNSCGGGANSNLSNMNNNAFGGVDGNNGNKLSAADEDSEFFPKESSDSGLLEEIVNKFLPKPKKEIKTEFLPQTVTLSDPFVSTASVYDQMLEMKKGVTKNEFLGVGFDQNGFNMQQYENFNNGVFHQSLPAGNDQIMVNYAENSAIQYQEYLNAFALRMQNA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01392 380 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Tsu05g01392 380 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Tsu05g01392 380 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Tsu05g01392 380 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Tsu05g01392 380 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Tsu05g01392 380 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Tsu05g01392 380 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Tsu05g01392 380 MobiDBLite consensus disorder prediction 1 49 - -
Tsu05g01392 380 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 380 - -
Tsu05g01392 380 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 380 - -
Tsu05g01392 380 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01392 Tsu-Chr5 13025575 13026717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01392 1 345 AP2-EREBP Transcription Factor Family AT1G24590 34.375 1.14e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu05g01392 AP2 5.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01392 - - gmx:102669715 260.766