Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01377 ATGGATTTTGAAGATCAAGAAGAACAAGAGGAAGAGTTATGTGCGAGTTATGACTCGTTACCTAACTCATCCCGAGTTAAGATGCCAGGTGGCACTGAACCTATCATGGTAACTCAACCACTCAGAAACATCATCGTCAataacaacagcaacaacaacggGAACAGTAACATCGGTGTCGGAAACGGAAAATCAAGGTATAGAGAGTGTTTAAAGAATCATGCTGTTGGAATTGGTGGTCATGCTCTTGACGGTTGCGGCGAGTTTATGCCGGCAGGAAATGAAGGAAGTTTGGAATCGTTAAAATGTGCTGCTTGTAACTGCCACCGTAATTTCCACCGCAAAGAGACGACAGATATTGTTACTGGTGGTGACCCTTTTCTGTTGACACACCATAGTCACCACCCACCACCTCCACCGCAGTTTGCGGCTTATTATCGAACTCCGACGGGGTATTTGCATGTTTCTGGACAGCAGAGGACGGGGACGCTTGCTCTGCCATCGACTTCTGGTGGCGGTGGAGGGACTCAGAGTACGAGGGAGGAACAAGAAGATGTTTCGAATCCAAGTGGTGGTGGGTCGAGTAAGAAAAGACATAGAACAAAGTTCACACCAGAGCAGAAAGATAAGATGTTGGAATTAGCTGAGAAATTGGGTTGGAGAATTCAGAAACATGATGAAGGTTTGGTTCAAGATTTTTGCAATGAAAGTGGTGTTAAGCGTCATGTTCTTAAAGTTTGGATGCATAACAACAAGCACACTCTTGCTTTCCAACTACTACCATCAATGGCGTTTTGA 798 0.4373 MDFEDQEEQEEELCASYDSLPNSSRVKMPGGTEPIMVTQPLRNIIVNNNSNNNGNSNIGVGNGKSRYRECLKNHAVGIGGHALDGCGEFMPAGNEGSLESLKCAACNCHRNFHRKETTDIVTGGDPFLLTHHSHHPPPPPQFAAYYRTPTGYLHVSGQQRTGTLALPSTSGGGGGTQSTREEQEDVSNPSGGGSSKKRHRTKFTPEQKDKMLELAEKLGWRIQKHDEGLVQDFCNESGVKRHVLKVWMHNNKHTLAFQLLPSMAF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01377 265 Gene3D - 180 257 - -
Tsu05g01377 265 MobiDBLite consensus disorder prediction 162 205 - -
Tsu05g01377 265 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 196 252 IPR006455 -
Tsu05g01377 265 MobiDBLite consensus disorder prediction 162 194 - -
Tsu05g01377 265 MobiDBLite consensus disorder prediction 1 26 - -
Tsu05g01377 265 SUPERFAMILY Homeodomain-like 185 254 IPR009057 -
Tsu05g01377 265 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 47 256 - -
Tsu05g01377 265 Pfam ZF-HD protein dimerisation region 65 117 IPR006456 -
Tsu05g01377 265 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 116 IPR006456 -
Tsu05g01377 265 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 47 256 - -
Tsu05g01377 265 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 66 116 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01377 Tsu-Chr5 12732907 12736022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01377 63 255 ZF-HD Transcription Factor Family AT4G24660 53.886 2.33e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tsu05g01377 ZF-HD_dimer 1.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01377 - - gmx:100795063 298.13