Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01369 ATGGCGACGGCGAACGAGCGAGCGTTAATGGCGATGGCGACGGCGAGGGTTAGTGAACGAACGATGGTGATGGATTTGGAAGCTGTTTTTGATTCTGATGATACGGCTAGATACGGCGGCGATGCTTTGAATACTGTTGGCGATGGAAACACAGTTACCACATGTTGTAATATTTCTGATGCAATGTATCACCTGTTCCAACATGATTTTGACATCATTCTCGTTGAAACTCATATTCCAAACCAGAATACTTATGCTTTTGTTCAACTAATGACTTCACAGTTGAAAATTCCGGTCATTAtgaTGTCTCTTGATAACCAACTGCATTCTGTTATGAATTCCATTTCCAACGGGGCTTGCAGTTATTGGGCTAAACCATTAAATGAGAATCTATTCAAGAATATGTGGCAACATGTTGTGCGAAAGGATTTCATCCAAAGTGATCCACATGAACTCCTGGAGGCTAAAGGGCTTCAAAAGCGAGGAAgagatgatgttgttgatgttgtgCGGAAGGCTTTCATCCAAAGTGATCCACATGAACTCGAGGCTAAAGGGCTTAAAAAGCGAGGAAgagatgttgttgttgatgtttcaCAACAACCTCTTGCAAAGAAAACTTGTCTCTCTTGGACACTTGATTTGCACCAAAATGATGTTGATGTTTCAAAACAGCCTCTTGCAAAGAATACTCGTCTCTCTTGGACACCTGATTTGCACCAAAAATTTCTGGTTCATCGAGCTGGACCTCAGAAAGATATATACTTCAAACCAGAAGAAGTAAAGGCAGCCATTGTTACTTGTGGAGGACTGTGTCCCGGTCTTAACGATGTCATTAGACAGCTGTCAAGGAAAGTAGTTCAAAACATTCATCTTTCAGGTGGTAGCCTATTAGGAGTTTCGCGTGGAGGACCTGGAGTTGATGAAATTGTCGACAGTTTGGAGGAAAGAGGCATCAACATGCTCTTTGTGTTGTGTGGAAATGGTACACATGCTGGTGCAAATGCAATTCACAATGAGGTTTTTAATCCTTTAACTTTgttttcaattcAACAACTCGATCAGAAAAGAGAGGATTTTAGGGTGAAATTTCCATTCCTGTTCGTTCCCATGGGTGGAGGCAGCAAAAGCCGAACAAAAAAGAAATCCAACTCTAAGAACAAACTCAcATCTTCTGAACGTCAACGTATTTATGATGAGGTTTATGATCATgTACTATCTGATATACAAGCCAaaaaagtagaagaagaagaagaagagaaagccCGACGATTAGCAGAAGAGGCtcttgctcaaaaaaaaaaactgcaggCCCGCAAAGCAGAAGAGGCAGCAGAAAGGGCTTGTACTCTAAATTCACTCTGGGCCACTGCTGATAAAATCCACCGTATTTTCCTCCCACACTCGACTAGAGAAATGCTTTATCGAAAACTTGCAGAAGTTACAAACACAGCCGTCACCTATGAAAATGATATGAAGCCCTTGGATGCCAGCAGCAACCAGCCGTTGGATGAGCTCAACAAGTCAACACAAAACCTTAGGCTTGAGGATAAAGCTGCTGTTCAGGAGGGGGGGTTTCTTTCTGAGCGATGCCCTTTAATTCGTGCATATGGTGCTATCCGATTCAATGCAAAAGccaaggtttcatcagagtggTTGGCTTTTGGTTCTTTCTACTTCATCATTCCTCAGGTTGAATTTAATGAGCTTGAAGGAGGATCAATGCTTACCACTACTATTGCTTGGGATAATGCTCTTTCTTGGTCATGGGAAAATGCAATGAGTGCACTTCAAGAAACACTTTACAAAGTTTCTTCTTCCATAGTGAAGTTTCCTAAGCAAGCTCCTCCAGCAGTGATACTAAGCAGCCATAACATTCCTAGTAAATTAGATTGGAATCTTGCTGGTAATAAAGCTTTGCAGATGATAGAGCGAAATGTACTTCGCTCTCCAAGGTCAACTACATCTCAATCTTGCTGCttatttttgtccaaattgtTTCTCTATTGCTTCCTTCTTAGCTTTTGCATCATTCCTTCTGTTGCAAGAAATCATTTGAAAAGCTCAATTTCTTCTTCCATATTGGAAATTCAGGCTGTTCTAGCACGGAGCACTAGAGTAGTGCCTACTGCTATTATCGATCCTCTAACGTGGTTAGCTTGCTTAAAGGTTGAAGGTGACAATGCTTACCAGTTTTTCCTTCAGCCGCCTAATGCACCAGCATTTATTGGAAACACACCAGAGCAACTATTTCACAGAAAAGGCCTACATATCACTAGTGATGCTTTGGCCGCAACCCGTACTAGTGTCACTAGAACTAGACCATCAAATTGA 2334 0.392 MATANERALMAMATARVSERTMVMDLEAVFDSDDTARYGGDALNTVGDGNTVTTCCNISDAMYHLFQHDFDIILVETHIPNQNTYAFVQLMTSQLKIPVIMMSLDNQLHSVMNSISNGACSYWAKPLNENLFKNMWQHVVRKDFIQSDPHELLEAKGLQKRGRDDVVDVVRKAFIQSDPHELEAKGLKKRGRDVVVDVSQQPLAKKTCLSWTLDLHQNDVDVSKQPLAKNTRLSWTPDLHQKFLVHRAGPQKDIYFKPEEVKAAIVTCGGLCPGLNDVIRQLSRKVVQNIHLSGGSLLGVSRGGPGVDEIVDSLEERGINMLFVLCGNGTHAGANAIHNEVFNPLTLFSIQQLDQKREDFRVKFPFLFVPMGGGSKSRTKKKSNSKNKLTSSERQRIYDEVYDHVLSDIQAKKVEEEEEEKARRLAEEALAQKKKLQARKAEEAAERACTLNSLWATADKIHRIFLPHSTREMLYRKLAEVTNTAVTYENDMKPLDASSNQPLDELNKSTQNLRLEDKAAVQEGGFLSERCPLIRAYGAIRFNAKAKVSSEWLAFGSFYFIIPQVEFNELEGGSMLTTTIAWDNALSWSWENAMSALQETLYKVSSSIVKFPKQAPPAVILSSHNIPSKLDWNLAGNKALQMIERNVLRSPRSTTSQSCCLFLSKLFLYCFLLSFCIIPSVARNHLKSSISSSILEIQAVLARSTRVVPTAIIDPLTWLACLKVEGDNAYQFFLQPPNAPAFIGNTPEQLFHRKGLHITSDALAATRTSVTRTRPSN 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01369 777 Pfam Phosphofructokinase 281 343 IPR000023 GO:0003872|GO:0006096
Tsu05g01369 777 Gene3D - 284 350 - -
Tsu05g01369 777 Gene3D - 257 283 - -
Tsu05g01369 777 SUPERFAMILY CheY-like 41 152 IPR011006 -
Tsu05g01369 777 SUPERFAMILY ADC synthase 697 768 IPR005801 GO:0009058
Tsu05g01369 777 PANTHER ISOCHORISMATE SYNTHASE 2, CHLOROPLASTIC 525 646 - -
Tsu05g01369 777 PANTHER ISOCHORISMATE SYNTHASE 2, CHLOROPLASTIC 696 770 - -
Tsu05g01369 777 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Tsu05g01369 777 PANTHER - 525 646 IPR044250 GO:0008909
Tsu05g01369 777 PANTHER - 696 770 IPR044250 GO:0008909
Tsu05g01369 777 SUPERFAMILY Phosphofructokinase 240 341 IPR035966 GO:0003872|GO:0006096
Tsu05g01369 777 Coils Coil 412 446 - -
Tsu05g01369 777 Gene3D Anthranilate synthase 411 774 IPR005801 GO:0009058
Tsu05g01369 777 Gene3D - 29 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01369 Tsu-Chr5 12605938 12615855 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01369 67 286 Response Regulator Gene Family AT3G62670 27.273 2.08e-16 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu05g01369 PFK 9.1e-08 CL0240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01369 K02552 - gmx:100804974 314.309