Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01365 ATGGCTGAAAGTTTTGACAGTGCTACATCTAATCTTTTATGTTCTGAAAACAATAGCACttgttttgatgatgatgatttggaatGTAATGATGTTTTTGATGGTTTTGGTATCTCATCTTCATGGGATTACACAAACCTTAACTTAGACAACGTTGGATCGGattcatttgtttgttttgttgcaCTGAGTGAAGAAATTGTGAGGGTTATGGTTGATAAAGAGAAGGATCATTTGCCAAGAGATGATTATTTGATGAGATTGCGTAGTGGTGATTTGGATTTGAGTGTTAGAAGAGAAGCTCTTGATTGGATTTGGAAGGCTCATGCTTACTATGGATTTGGACCCTTGAGTCTTTGCCTATCTGTGAACTACTTGGATCGCTTCCTATCGGTTTATCAATTACCGAAAGGTGTGAGTTGGACTGTGCAATTGTTAGCTGTAGCTTGCTTTTCACTTGCAGCTAAAATGGAGGAAGTAAAAGTGCCTCATTCGGTGGATTTACAGGTTGGAGAACCAAGGTTTGTATTCCATGGTAAAACAATTCAAAGAATGGAACTAATGGTATTAAGCACATTAGGATGGAAAATGCAGGCTTTAACTCCTTGTTCCTTCATAGACTATTTCCTTGTTAAGATTAGTTGCGAGAAGCATGCGGAAAAGTCATCAATTACAAGATCAGTACAGCTTATCCTTAACATAATCAAGGGTATTGACTTCTTGGAATTCAGGTATTCTGAAATCGCTGCAGCGGTGGCAATTTCAGTTTTAAAGGAGGTTCCAGTACAAGAAGTTGATAAGGCCATAACTGATTTCGTCATTGTAGAAAAGGATAGAGTTCTAAAGTGTGTTGAATTGATAAAAGATCTTTCCTTGAACAAGGTTGGTGCTACCAAGAATACAACATATGTGCCTCAAAGTCCTATTGGGGTGCTTGATACAGGGTGCATGAGTTTTAAGAGTGATGAATTAACAAATGGTTCATGTCCAAATTCTTTACATAATAGTCCAAATACTAAAAGGAGAAAAATTGATGGACCTTCTAATGGATCTTCACAATCATGA 1065 0.3596 MAESFDSATSNLLCSENNSTCFDDDDLECNDVFDGFGISSSWDYTNLNLDNVGSDSFVCFVALSEEIVRVMVDKEKDHLPRDDYLMRLRSGDLDLSVRREALDWIWKAHAYYGFGPLSLCLSVNYLDRFLSVYQLPKGVSWTVQLLAVACFSLAAKMEEVKVPHSVDLQVGEPRFVFHGKTIQRMELMVLSTLGWKMQALTPCSFIDYFLVKISCEKHAEKSSITRSVQLILNIIKGIDFLEFRYSEIAAAVAISVLKEVPVQEVDKAITDFVIVEKDRVLKCVELIKDLSLNKVGATKNTTYVPQSPIGVLDTGCMSFKSDELTNGSCPNSLHNSPNTKRRKIDGPSNGSSQS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01365 354 Pfam Cyclin, N-terminal domain 66 197 IPR006671 -
Tsu05g01365 354 SUPERFAMILY Cyclin-like 55 197 IPR036915 -
Tsu05g01365 354 PANTHER CYCLINS 1 346 IPR039361 -
Tsu05g01365 354 SMART cyclin_7 103 191 IPR013763 -
Tsu05g01365 354 MobiDBLite consensus disorder prediction 327 354 - -
Tsu05g01365 354 CDD CYCLIN 98 190 IPR013763 -
Tsu05g01365 354 Gene3D - 71 286 - -
Tsu05g01365 354 ProSitePatterns Cyclins signature. 98 129 IPR006671 -
Tsu05g01365 354 SMART Cyclin_C_2 200 323 IPR004367 -
Tsu05g01365 354 Gene3D - 81 198 - -
Tsu05g01365 354 PANTHER CYCLIN-D4-1-LIKE 1 346 - -
Tsu05g01365 354 Pfam Cyclin, C-terminal domain 201 300 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01365 Tsu-Chr5 12553284 12555979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01365 64 260 Core Cell Cycle Gene Families AT5G65420 62.312 3.10e-86 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01365 K18810 - gmx:100794010 484.952