Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01359 ATGGATCCTTTCAAAGGATCCGAATCCGAACCCGAAAACCCGATCGCATCATGCATCACCATGCTCTCCCTCCGCAACTTCACCGCTTGCAGTGACTTCGCCCGCCGTTTACCTCTCTCCGATTCAATCGGCCGTATCCTCACAATCGCCGACGTTCTCTCCGCCCCTGACCACTACTCAGTCCTCCGTCTCCGCCGTTCCGAAGCCGTTAACCGTGACCTAGCTCGTCAACATTACGCGAAGTTCGCGATCCTTCTAGACCCTACAAGCACTGAAAAATTCCCCTTTCAAGATGAAGCCCTAGCACGTGTTCGTGAAGCTTGGCACGTGCTCTCTGACCCTGATCGCCGTGCTGTTTATGATCGTGGTGTTGTTGACTCCGCCGCTACGTTTTGGACTGCATGTCCTTATTGCTGGAATTTGTATCAGTATGAGAAGAAGTATGAGGGTTTTTCTCTGATGTGTCAGAGTTGTTCTAAATCTTTTCACGGTGTTGCTGTTAAGTCGCCGGTGAAAGTCGGTGCTACGGTGATCGAAGGGGAAGAGCGGCGACAGTATTATAAATGTCGCGCTAGAGTGCCGTTGAAGTTTTATGAGGTGAAGGAGAATGGTAATGAGAACATAACGGGTGAAAATTCTGCTGAATTTGTCTATGTttctgatgatgatggtgattggGAGAAAGAATGGGGGAATGTGGGTGGTGCTGGTGGTGGTGTGAGAAATGAAGGTTTTGAGAAGGTGATTCAAGATAATCATCAAATGCAAGGGAACGAGAAACCAAAGACGAGGATGAAGACTGTGGCGAGGAAGAGTGTGGCGAACAGAGTGacaagatttgattttgataataACTTGAATGTGGGTTTGGATGCTAAGGATTGTGAATTGGAGTTTACAGAAGGAGCTGATGATGTCTTTGTCGGGTTTCAACAGGGCATGCAACATGTTCGAAATTACTATAACTCAGAAGCTCAAATGATAAGAAACAACTTTTCACGGTCGACATTCATCTCACAAACATACAAAAGCAGTTTCTTGAAGCAAAGATCAAAGGCAGATAACAAATTACTAGCAGCCAAGAAACACAGTGAAGCAGAAAAGAGACGTAGAATGCGAATCAATGGTCAATATGACACCCTCCGCGACATCCTCCCCAACTTGATCAAAAAGGACAAGGCATCAATACTAGTGGAGACTATCAAGCAAGTGAAGGAGTTGAAGAAAAAAGCATTAAAACTAGAAGAAGATAATCATGGTACCACAAAGGAGGTCAAGTTTCCAAGTGGAGTAGACAAATTGAATTTGGAAAAGTGTAATGATGAGAAGGGTTTAGTGAAGGCTACATTAAGTTGTGAGGATAGACCAGGATTAATGTCTTCTATTGCAAGAGCACTAGGGTCAATGAAAGCAAAAGTTGTAAAAGTTGAGATGGTGACAGTAGGTGGAAGAAACAGAAGTGTGTTATGGGTGCAAGGTGTTGAAAATGAAGGTTTAGGGATGCTTAAGAGTACTTTAAAAGTTGTCATGCATAAGCCAAGCTTTAAGATGAGGAGGTTTACTCAATAA 1569 0.4321 MDPFKGSESEPENPIASCITMLSLRNFTACSDFARRLPLSDSIGRILTIADVLSAPDHYSVLRLRRSEAVNRDLARQHYAKFAILLDPTSTEKFPFQDEALARVREAWHVLSDPDRRAVYDRGVVDSAATFWTACPYCWNLYQYEKKYEGFSLMCQSCSKSFHGVAVKSPVKVGATVIEGEERRQYYKCRARVPLKFYEVKENGNENITGENSAEFVYVSDDDGDWEKEWGNVGGAGGGVRNEGFEKVIQDNHQMQGNEKPKTRMKTVARKSVANRVTRFDFDNNLNVGLDAKDCELEFTEGADDVFVGFQQGMQHVRNYYNSEAQMIRNNFSRSTFISQTYKSSFLKQRSKADNKLLAAKKHSEAEKRRRMRINGQYDTLRDILPNLIKKDKASILVETIKQVKELKKKALKLEEDNHGTTKEVKFPSGVDKLNLEKCNDEKGLVKATLSCEDRPGLMSSIARALGSMKAKVVKVEMVTVGGRNRSVLWVQGVENEGLGMLKSTLKVVMHKPSFKMRRFTQ 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01359 522 Gene3D - 446 518 - -
Tsu05g01359 522 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 1 311 - -
Tsu05g01359 522 Gene3D DnaJ domain 50 124 IPR036869 -
Tsu05g01359 522 Coils Coil 397 424 - -
Tsu05g01359 522 ProSiteProfiles dnaJ domain profile. 57 124 IPR001623 -
Tsu05g01359 522 CDD ACT_UUR-ACR-like 449 499 - -
Tsu05g01359 522 Pfam Helix-loop-helix DNA-binding domain 362 407 IPR011598 GO:0046983
Tsu05g01359 522 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 358 407 IPR011598 GO:0046983
Tsu05g01359 522 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 311 - -
Tsu05g01359 522 SMART finulus 364 413 IPR011598 GO:0046983
Tsu05g01359 522 Pfam DnaJ domain 57 121 IPR001623 -
Tsu05g01359 522 Gene3D - 359 428 IPR036638 GO:0046983
Tsu05g01359 522 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 361 423 IPR036638 GO:0046983
Tsu05g01359 522 SUPERFAMILY ACT-like 448 513 IPR045865 -
Tsu05g01359 522 SUPERFAMILY Chaperone J-domain 50 123 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01359 Tsu-Chr5 12458869 12462962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01359 9 258 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 26.280 2.95e-24 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu05g01359 DnaJ 6e-08 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01359 - - mtr:MTR_5g032370 491.5