Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01356 ATGACGCTTGTTGAACTTGCAAAGCGTACTGGAAAATCATTATCTTCTTTGCAAGATATTCTCACAAATGTTGGTGAAAAGATTGAATCAGAGTTTGATCCTCTCAGTATGGATGTTGCCGAGCTTGCTGCAATGGAGGTCGGCGTTAATGTTAAAAGGTTACATTCAACTGAAGGTTCAGAAATTTTACCACGTCCTGCAGTCGTGACAGTGATGGGTCATGTTGATCACGGCAAAACTTCCCTTCTTGATGCCTTGCGTCAAACATCAGTTGCAGCCAGGGAGGCTGGTGGCATTACTCAGCATCTAGGTGCCTTTGTGGTGGGCATGTCATCAGGAGCATCAATCACATTTCTTGATACTCCTGGTCATGCTGCATTTAGTGCAATGCGTGCAAGAGGTGCAGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGATGATGGTGTAATGCCCCAAACACTTGAAGCCGTGTCCCATGCAAAATCAGCTAATGTACCAATTGTAGTTGCGATCAATAAATGTGATAAACCAGGTGCAAATCCTGAAAAAGTAAAACTACAGCTTGCTTCCGAGGGCTTGCTTCTGGAGGAGATGGGTGGGGATATTCAGGTTGTTGAAGTTTCAGCGATTAAAAAGACTGGACTGGATAACCTAGAGGTAGCTTTACTCCTTCAGGCTGATATGATGGATCTTAAAGCACGATTTGATGGACCTGCTCAAGCATATGTGGTGGAAGCAAGACTTGACAAAGGACGGGGTCCATTGGTGACTACTATAGTAAAGGCAGGGACTTTAGCTTGTGGACAGCATGTGGTTGTTGGCTCAGAGTGGGGAAAAATCAGGGCTATTAAAGATGCAGCAGGGAGGTCAACTCAACGAGCAACTCCGGCAATGCCTGTTGAGATTGAAGGGCTTCGAGGGCTGCCAATGGCCGGTGATGATGTCATTGTTGTTCATTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGAAAAAGAAATCTGAAGAGGACAGGCTTAGGGGCAAGATGGTACAGAAAATCCCAACTACTTCAGATGATACTGAGGAGGTTCCGCTGAGGGTTGAAATGCCAGTAATTGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCTGTTACAGATGCATTGACAACTTTAAATAGTCCTCAGGTTTCTGTGAATATTGTCCATGTTGGCGTGGGCCCTATTTCTCAATCTGATGTGGACTTAGCACAAGCTTGCGGTGCATGTATAGTTGGATTCAATGTCAAGAGTCCACCTATTTCTCTTAGCCAGGCAGCAACTCGTGCTAGTATCAAGGTAATTGTGCACCGAGTGATTTACCACTTATTGGAAGACATAGCCAATTTGATAATAGAGAAGGCTCCGGGTACTCCCGAGACTCATGTAGCTGGGCAAGCAGAAGTGCTGAATATCTTTGAAGTGAAAGGGAGCAAATCTAAGGGACCAGATGTGAAAATAGCTGGTTGTAAGGTTGTTGAAGGTTTTGTGAACAGGACAGCAACCATGAGGCTTCTACGGAGCGGTGAAGTGGTGTTTGAAGGACCTTGTTCATCTCTTAAGAGGGAGAAACAGGATGTGGATTCTGTGAAGAAGGGAACTGAGTGTGGACTAGTTATCAGTAACTGTCATGATTTTCAGATTGGTGATGTTATCCAGTGCTTAGAACAAGTAATTAGGAAGCCTAAGTTTATTAAGTCGGAGAGTGGCGCTGTTCGAATAGAGTGCTGA 1758 0.4477 MTLVELAKRTGKSLSSLQDILTNVGEKIESEFDPLSMDVAELAAMEVGVNVKRLHSTEGSEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVGMSSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAVSHAKSANVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDIQVVEVSAIKKTGLDNLEVALLLQADMMDLKARFDGPAQAYVVEARLDKGRGPLVTTIVKAGTLACGQHVVVGSEWGKIRAIKDAAGRSTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRKKKSEEDRLRGKMVQKIPTTSDDTEEVPLRVEMPVIVKADVQGTVQAVTDALTTLNSPQVSVNIVHVGVGPISQSDVDLAQACGACIVGFNVKSPPISLSQAATRASIKVIVHRVIYHLLEDIANLIIEKAPGTPETHVAGQAEVLNIFEVKGSKSKGPDVKIAGCKVVEGFVNRTATMRLLRSGEVVFEGPCSSLKREKQDVDSVKKGTECGLVISNCHDFQIGDVIQCLEQVIRKPKFIKSESGAVRIEC 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01356 585 Gene3D Translation factors 469 570 - -
Tsu05g01356 585 Pfam Translation-initiation factor 2 364 456 IPR023115 -
Tsu05g01356 585 Hamap Translation initiation factor IF-2 [infB]. 2 571 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Tsu05g01356 585 TIGRFAM IF-2: translation initiation factor IF-2 2 570 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Tsu05g01356 585 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 576 IPR015760 -
Tsu05g01356 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 255 IPR027417 -
Tsu05g01356 585 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 365 474 IPR036925 -
Tsu05g01356 585 CDD IF2_eIF5B 68 231 - -
Tsu05g01356 585 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 1 576 - -
Tsu05g01356 585 Pfam Elongation factor Tu GTP binding domain 69 221 IPR000795 GO:0003924|GO:0005525
Tsu05g01356 585 SUPERFAMILY Translation proteins 238 320 IPR009000 -
Tsu05g01356 585 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 64 234 IPR000795 GO:0003924|GO:0005525
Tsu05g01356 585 CDD mtIF2_IVc 474 563 - -
Tsu05g01356 585 Gene3D Translation factors 237 352 - -
Tsu05g01356 585 TIGRFAM small_GTP: small GTP-binding protein domain 67 219 IPR005225 GO:0005525
Tsu05g01356 585 CDD IF2_mtIF2_II 240 335 IPR044145 -
Tsu05g01356 585 SUPERFAMILY Translation proteins 470 570 IPR009000 -
Tsu05g01356 585 Gene3D - 363 466 IPR036925 -
Tsu05g01356 585 Gene3D - 62 236 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01356 Tsu-Chr5 12428729 12432253 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01356 55 549 Eukaryotic Initiation Factors Gene Family AT1G76810 26.445 1.29e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01356 K02519 - gmx:100790572 995.342