Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01354 ATGGCTCTTCCTGGTTCCCTGCAACTGTCTCATGGATTGGGACTTTGCAGGAACCTGAGCTCCAATAAAGATATGAGGGTAAAGGGGAGATGCAAGTTACAGTTGTTTAATGCATGTCCTTCATATCCAGTTTCATTCATGAAACATGACTACAGGGGTCTCCAACATCTCCGACATATAAACAGGTCAACACATAAGTTGTCTTGCAAATCCCGCTCTTTTAAATGTCATTGTTTCTTAGTGCCAGGCCAACACATTGACCTTCCTGCCGTTAAGGTGGCTGCTACAGTGCTGACAAGGTGCTGTAATGTGTTACAAAATAGTCCAGTCGTTGTAAAGTTGATTCCTGCTGTTGGCGTTATCATTTTTGCAGTATGGGGTGTTGGTCCATTAATGTTTCAGACAAGGAAAATATTTTTTCAGAGGAGTGATAATAGCTGGAAAAAAAGTACCACTAATTACGTAGTAACTTCATATCTTCGACCATTATTGTTATGGACTGGAGCCATACTTATTTGCAGAGCATTGGAGCCAGTCATTCTACCTACAGAAACTAGCCAGGCTGTTAAGGAACGACTTCTGAGTTTCGTTAAATCATTGTCGACTGTAGTGGCTTTTGCCTATTGTTTATCAAGTGTAATTCAACAAGCACAGAAATTTATAACAGAGAATGCAGATACAAGCGACACAAGAAATATGGGATTCCAATTTGCAGGCAAAGCTGTTTATTCTGCAGTATGGATTGCTGCCTTTTCATTGTTTATGGAATTGCTAGGCTTCTCTACCCAGAAATGGGTTACAGCAGGAGGTTTTGGAACAGTTTTATTGACTCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGCGCGATGATTCATGCAACTCGGCCTTTTGTGGTAAATGAATGGATTCAAACGAAGATTGAAGGATATGAGGTTTCTGGCACTGTTGAGCATGTTGGCTGGTGGTCTCCAACAATTATACGAGGCGAAGATCGTGAAGCTGTACACATTCCAAACCACAAATTTACAGTGAATGTTGTGCGGAACCTCACTCAAAAAACACATTGGAGAATCAAAACCCACCTAGCCATTAGTCATTTGGATGTAAATAAGATTAACATCATTGTTGCTGACATGCGGAAAGTATTAGCCAAAAATCCTCAAGTTGAGCAGCAGAGGTTGCACAGGAGAGTGTTTCTGGACAATATAAACCCTGAAAATCAGGCTCTTATGATTCTGATTTCTTGTTTTGTCAAGACCTCAcattttgaagaatatttgtgtGTTAAGGAAACTATACTATTGGATCTTCTTAGAGTTATCAGCCATCACCGGGCCCGGCTTGCAACACCAGTCCGTACCATACAGAAAACATATGGTGATACTGACTTGGACAACATACCGTACGCAGATTCCACATTTAATGGTGCAGGACCAGTATCTAACCGTCCGTTATTAGTGATTGAATCGCCTTACAAGAACAGTGCAGATGATAAAACAAAAAGTCGATCAGCACGTGCAACTGTTGACCAAGATAACAAGACAGCTGTGAAAACCAAACTTGATACCAAGACAGACGACAAGGTTGGACCAATAGGAGCACCAGATACCAAGGTTAGAGGAACACAAGATGACTCTGAGGTGGATGTCAAAGTCATGGCATCTAACTCTGATGCAAATGGAAACTCTAAACCTGATTCTGAAGTGAGTGAAAACAAGCCActcaaatcaaatataaacaagGTAAATGTGGAGGTACCAACCATGTCTTCTAATTCTACCTCCAAAGTACCTGGTTCCGAAGTAGATAACTCAACCCAGAAGGACATCCATGTCAAACAATCCAAGGGTCAAACCATTAAAAACAGCAAACCGAACATTGACTCTGACAATCTAGTTTCCTTATCAGCAAACAACGCTGACAAAGGCAATGGAAATACACCAACAAAACAGCAAGGAGAAAGGAAACCTGCTGCATCCAGGCCTATTCTTGAAGAGAATATAGTACTAGGTGTTGCATTGGAGGGATCAAAGAGGACACTTCCTATTGATGAGGGGAATGACCCTGTGACAACTCAAGAGGCAAAGGAAATGGCTTCACACCAGGGTGGAAATGGATCTCCAAAGGCTTCAGATGGGAATGTGAAGTAA 2157 0.4089 MALPGSLQLSHGLGLCRNLSSNKDMRVKGRCKLQLFNACPSYPVSFMKHDYRGLQHLRHINRSTHKLSCKSRSFKCHCFLVPGQHIDLPAVKVAATVLTRCCNVLQNSPVVVKLIPAVGVIIFAVWGVGPLMFQTRKIFFQRSDNSWKKSTTNYVVTSYLRPLLLWTGAILICRALEPVILPTETSQAVKERLLSFVKSLSTVVAFAYCLSSVIQQAQKFITENADTSDTRNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQKWVTAGGFGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVNKINIIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALMILISCFVKTSHFEEYLCVKETILLDLLRVISHHRARLATPVRTIQKTYGDTDLDNIPYADSTFNGAGPVSNRPLLVIESPYKNSADDKTKSRSARATVDQDNKTAVKTKLDTKTDDKVGPIGAPDTKVRGTQDDSEVDVKVMASNSDANGNSKPDSEVSENKPLKSNINKVNVEVPTMSSNSTSKVPGSEVDNSTQKDIHVKQSKGQTIKNSKPNIDSDNLVSLSANNADKGNGNTPTKQQGERKPAASRPILEENIVLGVALEGSKRTLPIDEGNDPVTTQEAKEMASHQGGNGSPKASDGNVK 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01354 718 Gene3D - 299 354 IPR023408 -
Tsu05g01354 718 PANTHER MECHANOSENSITIVE ION CHANNEL-LIKE PROTEIN 1 718 - -
Tsu05g01354 718 MobiDBLite consensus disorder prediction 494 718 - -
Tsu05g01354 718 Pfam Mechanosensitive ion channel 240 447 IPR006685 GO:0016020|GO:0055085
Tsu05g01354 718 MobiDBLite consensus disorder prediction 496 535 - -
Tsu05g01354 718 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 718 IPR045042 -
Tsu05g01354 718 MobiDBLite consensus disorder prediction 695 718 - -
Tsu05g01354 718 MobiDBLite consensus disorder prediction 551 656 - -
Tsu05g01354 718 Gene3D - 192 297 - -
Tsu05g01354 718 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01354 Tsu-Chr5 12407890 12414538 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01354 9 718 Mechanosensitive Ion Channel Family AT5G10490 55.216 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01354 K22047 - gmx:100789444 1102.04