Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01344 atggaTGCAacacaaaaagagaaaatatatgtAGCTATTGgtgatgatgcacaagatggATTTAATACTTTGAATTGGGCACTCAAGAAATGGAATTCTCATCCAATTTCCATTGTTATTCTTCATGTGACTCATAATATTTCTAAGGATTATGTTTATACACCATTTGGAAAACTTCCAGCAAGATCTTTGAATGATGAGAAACTTGAAGCTCTAAGAAAAGATGAGAAAGAGAGGATCAAGAAgttgttttccaaatatattgCTTTCTGTGGCAAGGTGTCAGCGGAAATCCGTGAAGTTGAGAAACTTGATGAGTCTATGCAAAAGCGCGTAATAGACTTAATAATTGGGCTAGGAATTACTAAATTGGTCATGGGATTTTCATTCATGAAGCCTTCCTTgaAATCAAAAGGTGCTATTAGTGGACTATTCTATGTTCATCAACACAAGCCTAGTTTATGTGAATTATTCATTATATGTGGTGGAAAGCAAGTTTTTCTAAGGGGAAACAATGATGAGAAAATCATGGAAGATGATAGTGGAGTCATGGTTGCTAAAATGAGAGATAAGGTAACTTTTAAAGATTGGCTAGACAAAATGTTCAGTGACAAAACCAATGATTATTCTCAGAATAGATTAAGTGCATCTCCTTCAACAATTAATTTGGTCCAAAATCAATGGGAATTTTATCTTCAAGACATAGAAAATTATTATCAAGaattatcatcatcaaatttGGAAGAAGGAAGCTATGTGCAAGATAATGATATCTCACAGATTAGTCCAATTGAGCCACATGTCATTGAATTGAACAATTCTAATAAGAATAATGCAGAAAAAATTGAGATCCTGAAAAATAAGCTAAACGAAGCTCACAAAACCATTGAGTTGAAGAGGAAAGAGACTAAGGAAAATATAGAGAGACGCACAAAAGCTGAATGGGCAATTAGCTTATGCAACACCAGGGCTGAAGAAATTGAAGGTAGAATAAGGGAAGAAGTAAGTACAAAGGAGGGCCTAAACAAGGAATTGCAATTGGAGAAAGATCAAAGAGAAGAAATGAGAATAGAGATTGAAGAGAGAAAACAAAGAATGAGTTCATTGGTAGAGCTTCAATCAGAACTAtcaaacaagcttcaaattTCAACAATAGCAAGATCAAGAGCCGAGACACAAGTAGAGAGAGCAGTGAGGGAGAGGGCCGAAATGGTGAGAGAGATAGAGGAGTTAAGGAGGCAGAGAGATGTGTTGAATAGAAGAATCGAGTTTTGCAAGCAAAAGGATGCCATAGGTATGGCCGCGAGACTGAGCGACAATGGAGCGAATTTTGGGATGAGGGAGTATAGTGAGGTGGAATTGAGGTTGGCGACCGATGACTTTTCGGAGCGGTTGAGGTTGAAGTCTGGTGGGGATTGGAGTAATGTGTATAGAGGACGCTTCAACCATTCTAGTGTTGCAATTAAGATGTTACCTTCTTTTGCTTCTTTGTCTCGAGAGGATTTTCAATCCAAgATGAGGTTTCTTGGTGATATTAGGCAACCACATCTAGTAGCCATGGTGGGCTTCTGCTCCGAGCCCAAATCCATAATTTTGGAATACATGGGCAATGGAAGCTTACAAGACATGCTATTTTCTAGGCGAAGAAATCGGGGCTTACGGTGGCACGATCGAATACGAATAGCAACGGAAGTTTGCTCGGGCTTGGGCTTTCTTAATTCATCTCCACAAAGGCCCATTCTTCATTGTCATTTGAACCCAGCCCATGTCCTTCTTGACCGCAATTTAGTCGCAAAAATTACGGGCTTTGGGCTTCAAGACTGCGACGACAAGGAATGCAACGTTGAGTCGGATTTACGGAACATAGGGATTTTGTTGATGCAACTTTTGACCGGAAGAGATTGGGCCGGGCCCATTGAAGAGCCCATGACAATGGATATGGATAGAGAAACATTGGTTAATGTTCTTGATGACATGGCTGGACAATGGCCATTGGATCTAGCAAAAGAGATTGTGAGCCTGGCTATGATTTGCATGTCTGTGAAAAGCAAGCCCAGCCTAAATTTAAGCATTGGAAGGGTCTTAGAAGAACTCAATAAGATAAGAAGAAAGGGTGATGAAATAGTTGCAAGGGAAGATAGAAAGGTAATTATTGGTGGATGCATAGATAGAGAGGGTTCTAGTGATGTTCCTAGTGTTTTCCTTTGCCCTATACTTCAGGAGGTGATGAAAAATCCACATGTGGCAGCAGACGGATTTTCTTATGAGCATGAAGCAATAGAACAGTGGTTGCATTCAGGACATGATACATCACCAATGACAAATTTAAGGCTGAAACACACATTACTTACACCAAATTATACACTCCGTTCCTTCCTTGAGGAATGGCAAACCAAACAATCAACTAAAATTGTAAACTAA 2421 0.3784 MDATQKEKIYVAIGDDAQDGFNTLNWALKKWNSHPISIVILHVTHNISKDYVYTPFGKLPARSLNDEKLEALRKDEKERIKKLFSKYIAFCGKVSAEIREVEKLDESMQKRVIDLIIGLGITKLVMGFSFMKPSLKSKGAISGLFYVHQHKPSLCELFIICGGKQVFLRGNNDEKIMEDDSGVMVAKMRDKVTFKDWLDKMFSDKTNDYSQNRLSASPSTINLVQNQWEFYLQDIENYYQELSSSNLEEGSYVQDNDISQISPIEPHVIELNNSNKNNAEKIEILKNKLNEAHKTIELKRKETKENIERRTKAEWAISLCNTRAEEIEGRIREEVSTKEGLNKELQLEKDQREEMRIEIEERKQRMSSLVELQSELSNKLQISTIARSRAETQVERAVRERAEMVREIEELRRQRDVLNRRIEFCKQKDAIGMAARLSDNGANFGMREYSEVELRLATDDFSERLRLKSGGDWSNVYRGRFNHSSVAIKMLPSFASLSREDFQSKMRFLGDIRQPHLVAMVGFCSEPKSIILEYMGNGSLQDMLFSRRRNRGLRWHDRIRIATEVCSGLGFLNSSPQRPILHCHLNPAHVLLDRNLVAKITGFGLQDCDDKECNVESDLRNIGILLMQLLTGRDWAGPIEEPMTMDMDRETLVNVLDDMAGQWPLDLAKEIVSLAMICMSVKSKPSLNLSIGRVLEELNKIRRKGDEIVAREDRKVIIGGCIDREGSSDVPSVFLCPILQEVMKNPHVAADGFSYEHEAIEQWLHSGHDTSPMTNLRLKHTLLTPNYTLRSFLEEWQTKQSTKIVN 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01344 806 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 5 799 - -
Tsu05g01344 806 ProSiteProfiles Protein kinase domain profile. 462 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01344 806 Gene3D Phosphorylase Kinase; domain 1 436 535 - -
Tsu05g01344 806 Pfam Protein tyrosine and serine/threonine kinase 471 609 IPR001245 GO:0004672|GO:0006468
Tsu05g01344 806 Gene3D Transferase(Phosphotransferase) domain 1 536 712 - -
Tsu05g01344 806 CDD RING-Ubox_WDSUB1_like 734 775 - -
Tsu05g01344 806 SUPERFAMILY Protein kinase-like (PK-like) 445 682 IPR011009 -
Tsu05g01344 806 SMART Ubox_2 733 796 IPR003613 GO:0004842|GO:0016567
Tsu05g01344 806 Coils Coil 268 306 - -
Tsu05g01344 806 Coils Coil 324 365 - -
Tsu05g01344 806 Coils Coil 387 428 - -
Tsu05g01344 806 ProSiteProfiles U-box domain profile. 729 803 IPR003613 GO:0004842|GO:0016567
Tsu05g01344 806 PANTHER OS02G0152300 PROTEIN 5 799 - -
Tsu05g01344 806 SUPERFAMILY RING/U-box 727 802 - -
Tsu05g01344 806 Pfam U-box domain 730 800 IPR003613 GO:0004842|GO:0016567
Tsu05g01344 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 728 805 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01344 Tsu-Chr5 12283137 12288517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01344 3 803 U-box Gene Family AT5G65500 47.654 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Tsu05g01344 PK_Tyr_Ser-Thr 7.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01344 - - gmx:100786771 1196.03