Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01340 ATGGCTCGTGCTACTACTACTACCAACTCTAGTATTAATCATAACTGGCTCTCATTTTCACTCTCACCCATGGAAATGTCTCACCTTGATTCATACGACGTCGCTTCATCCGttaccaacaacaacaacaaccacacctctcatcaaaatcatcatcactatTTCCTTGACAACATGTTTCACAATGGGTGGGGAAAGAGTGCTGAAGTAGCAGTACAACCAGAACAATCGATTTGGTTTATGGATTCAACAACGCAATCACAGGGCGTCGTTAACCACGCGCCGTCACCTAAGCTGAATGATTTTCTCGGTGACAGTCAAGCCGAGACGCAAGATGATTCTTCTCTAACAAACATGTACGATCACCACCATTACTTCGGTGGGGACCACCACCAGCATCAGCACCAGCAGCAACAACAGAATCACCAGGATCTTGTTGTTAGTGGTTTTCAAGCTTTTTCAAACAACTCTGGTGGCTCTGAAGTTGATGATTCTGGTTCGATTGGAAAATCATCTCAAGCTGCTGCATGTGGAAATGAGTTTGGAACTCATTGTGTTGAGTCTGGGAATGAGTTTGCTTACTCAGCCGCCGCCGCTGCTGCCGCGGTTAACGGTGCTTTGTCTCTCGCCGTTGTTCAGAGCTCCGATGAGAATGCTGTTGTTACAGTTGCTGATTCTGATAGCTCCAAGATAATCGCTGATACTTTTGGTCAGCGAACTTCAATTTACCGTGGTGTCACTAGGCATAGATGGACTGGAAGATATGAAGCGCATCTATGGGATAACAGCTGTAGAAGGGAGGGTCAAGCCAGGAAAGGGCGTCAAGGTGGATATGACAAGGAGGAAAAGGCCGCAAGATCCTATGATTTGGCTGCCCTAAAGTATTGGGGGTCCACTGCTACTACCAACTTCCCTGTTTCGAGTTATGAAAAGGAATTGGAAGAAATGCAAGGCGTAACTAAGCAAGAATTTATTGCGTCACTGCGGAGGAAGAGTAGTGGCTTTTCAAGAGGAGCTTCCATCTACAGAGGTGTTACAAGGCATCACCAACAGGGTAGGTGGCAAGCAAGAATTGGCCGCGTTGCCGGAAACAAAGACCTGTACTTGGGAACATTTGCAACCGAAGAGGAAGCGGCAGAGGCATATGACATCGCTGCCATAAAATTCCGAGGTGCAAATGCAGTCACAAACTTTGAGATGAACAGATATGATGTTGATGCTATAATGCAGAGTTCTCTTCCTGTTGGTAGTACTGCGAAACGCATGAAGCGCTCTCTGGGGTCTGAACAGAAAGCTTCTGTCACTGGAAATATTCAGCAGAACAACGACCAGTGGGCGTCATGTCTTATTAACAGCAACAAAGGAAACAACATCAATTTCGCAACCATTCCACATCGGCTGCCAGCTGCACCGAGTTCAGTCCCTTACGGAATGATTCCTTATGATGCGAATCCGACAGCATATTATCATCACACCCTCTTCCAACATTTCAACTCTGATACCAATGATGGCGCTGCAGAATCTGTTGTGAATTCCACCAATGCAGGAAACGGTGGACTCAATGCCATGCCACCAACATCAGCAGCTGAGTTCTACTTATGGCCTAATCAGTCTTATTGA 1620 0.4506 MARATTTTNSSINHNWLSFSLSPMEMSHLDSYDVASSVTNNNNNHTSHQNHHHYFLDNMFHNGWGKSAEVAVQPEQSIWFMDSTTQSQGVVNHAPSPKLNDFLGDSQAETQDDSSLTNMYDHHHYFGGDHHQHQHQQQQQNHQDLVVSGFQAFSNNSGGSEVDDSGSIGKSSQAAACGNEFGTHCVESGNEFAYSAAAAAAAVNGALSLAVVQSSDENAVVTVADSDSSKIIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARSYDLAALKYWGSTATTNFPVSSYEKELEEMQGVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVDAIMQSSLPVGSTAKRMKRSLGSEQKASVTGNIQQNNDQWASCLINSNKGNNINFATIPHRLPAAPSSVPYGMIPYDANPTAYYHHTLFQHFNSDTNDGAAESVVNSTNAGNGGLNAMPPTSAAEFYLWPNQSY 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01340 539 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13 535 - -
Tsu05g01340 539 CDD AP2 241 307 IPR001471 GO:0003700|GO:0006355
Tsu05g01340 539 ProSiteProfiles AP2/ERF domain profile. 341 399 IPR001471 GO:0003700|GO:0006355
Tsu05g01340 539 Pfam AP2 domain 341 391 IPR001471 GO:0003700|GO:0006355
Tsu05g01340 539 Pfam AP2 domain 242 297 IPR001471 GO:0003700|GO:0006355
Tsu05g01340 539 ProSiteProfiles AP2/ERF domain profile. 242 305 IPR001471 GO:0003700|GO:0006355
Tsu05g01340 539 SMART rav1_2 242 311 IPR001471 GO:0003700|GO:0006355
Tsu05g01340 539 SMART rav1_2 341 405 IPR001471 GO:0003700|GO:0006355
Tsu05g01340 539 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700|GO:0006355
Tsu05g01340 539 PRINTS Ethylene responsive element binding protein signature 381 401 IPR001471 GO:0003700|GO:0006355
Tsu05g01340 539 SUPERFAMILY DNA-binding domain 241 307 IPR016177 GO:0003677
Tsu05g01340 539 SUPERFAMILY DNA-binding domain 340 400 IPR016177 GO:0003677
Tsu05g01340 539 MobiDBLite consensus disorder prediction 118 137 - -
Tsu05g01340 539 CDD AP2 340 399 IPR001471 GO:0003700|GO:0006355
Tsu05g01340 539 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 13 535 - -
Tsu05g01340 539 Gene3D AP2/ERF domain 242 307 IPR036955 GO:0003700|GO:0006355
Tsu05g01340 539 Gene3D AP2/ERF domain 341 401 IPR036955 GO:0003700|GO:0006355
Tsu05g01340 539 MobiDBLite consensus disorder prediction 118 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01340 Tsu-Chr5 12228122 12233098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01340 80 539 AP2-EREBP Transcription Factor Family AT5G10510 53.645 6.94e-139 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tsu05g01340 AP2 2.2e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01340 K09285 - gmx:100775390 570.081