Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01339 ATGGCATCAAAAAACAATAACAGAAAAGTATTTTCAAGCGACGAAGAATTATCACCAAGAACAATACTATCCCTTGTTTCTGAAACAGAATCAGACAACAGTGAAAGCAGCAGTTTCATGTCCGACTCATCCGGTAACTCACCGCCGATCGAGCTTGTGGCGGGAGGAAAATCAGGTGGTAAAGATAATCAAATGCAGCAACAATTGAAATCAATGATGGGtgttttcaaattcaaatcagtGACAAAATTAACAGCTATTCCAATTCTTGTTGCTGCTAGCCATGAACTTACTAAGAAAGGATTAACTAAGAAATTGGCTAGAATTCGAAGTGCTGAAGAATGTATTGATATTGGTTCTATTCCTACAAAACCTTCTTGGAGGAATTTTGGTTATGCAGAACTTTGTGCTGCTACTAATGATTTCAATCCGGATAATTTGGTTGGAAAAGGTGGTCATGCTGAAGTATACAAAGGAAAGTTAGCAGATGGTCAAGTTGTAGCAGTAAAGAGACTAATGAATGATGATAGAGAGTTTGCCGATAGAGCTGGCGATTTCTTGACAGAGCTAGGAATCATTGCACACATAAACCACCCAAATGCTACACGTCTTGTTGGGTTCGGTATCGATCATGGCCTCTACTTCGTCCTACAATTAGCTCAACACGGAAGCCTTTCTTCTTTGCTATTTGATTCTGAATGCTTAGAGTGGAAGATAAGGTATAAGGTAGCTATTGAAGTTGCTGAAGGGTTGAATTATCTTCATGAAGATTGCCCGAGACGAATCATTCATAGGGACATCAAAGCCTCAAACATATTACTCAATGAAAATTATGATGCTGAGATATCAGATTTCGGACTCGCAAAATGGCTTCCAAATAATTGGGCACACCATGTTTGTTTCCCTATAGAAGGCACTTTTGGGTATTTGGCACCAGAGTACTTTATGCATGGTATTGTGGATGAAAAGACTGACATATTCGCATTCGGCGTTTTGCTACTTGAACTCATAACCGGTCGTCGTGCAGTTGATTCAGATAGCAGGCAAAGTATTGTGATTTGGGCCAAGCCACTGCTTGACTCAAACAATGTCAAAGAGCTAGCAGATCCTAGAATGGAAGGGAAGTATGATCCTATTGAAATGAAACGTGCCATGGAGACAGCTTCCTTGTGCGTCCATCATTCATCTTCCAAGAGGCCATTCATGAAACAAGTTGTGCAACTACTGAAGGGCGAGGAAGCAATTATAGATTCCAAGCGAATTTCAACTTCCTCAAAATCACAAATGTTAGAGGCTTGTGACCTACATGATTACACTTGTTCTAACTACTTGAACGACCTTAACCGCCATAGGGAACTAATCATGGAGTAA 1371 0.3975 MASKNNNRKVFSSDEELSPRTILSLVSETESDNSESSSFMSDSSGNSPPIELVAGGKSGGKDNQMQQQLKSMMGVFKFKSVTKLTAIPILVAASHELTKKGLTKKLARIRSAEECIDIGSIPTKPSWRNFGYAELCAATNDFNPDNLVGKGGHAEVYKGKLADGQVVAVKRLMNDDREFADRAGDFLTELGIIAHINHPNATRLVGFGIDHGLYFVLQLAQHGSLSSLLFDSECLEWKIRYKVAIEVAEGLNYLHEDCPRRIIHRDIKASNILLNENYDAEISDFGLAKWLPNNWAHHVCFPIEGTFGYLAPEYFMHGIVDEKTDIFAFGVLLLELITGRRAVDSDSRQSIVIWAKPLLDSNNVKELADPRMEGKYDPIEMKRAMETASLCVHHSSSKRPFMKQVVQLLKGEEAIIDSKRISTSSKSQMLEACDLHDYTCSNYLNDLNRHRELIME 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01339 456 Gene3D Phosphorylase Kinase; domain 1 119 217 - -
Tsu05g01339 456 SMART serkin_6 142 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01339 456 MobiDBLite consensus disorder prediction 17 48 - -
Tsu05g01339 456 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 6 456 - -
Tsu05g01339 456 PANTHER OS08G0249100 PROTEIN 6 456 - -
Tsu05g01339 456 Pfam Protein kinase domain 145 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01339 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Tsu05g01339 456 ProSiteProfiles Protein kinase domain profile. 142 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01339 456 Gene3D Transferase(Phosphotransferase) domain 1 221 432 - -
Tsu05g01339 456 ProSitePatterns Protein kinases ATP-binding region signature. 148 170 IPR017441 GO:0005524
Tsu05g01339 456 SUPERFAMILY Protein kinase-like (PK-like) 122 409 IPR011009 -
Tsu05g01339 456 MobiDBLite consensus disorder prediction 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01339 Tsu-Chr5 12218616 12225001 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01339 108 453 Trihelix Transcription Factor Family AT1G70460 40.833 3.19e-68 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Tsu05g01339 Pkinase 1.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01339 - - gmx:100775930 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01339 05 12218616 12225001 Tsu04g03029 04 37416527 37419696 PCT