Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01320 ATGGCAAACACATTATCAAATGAAAATGAAGTACCTGCTTTTGGGTGGGCTGCTAGAGACTCCTCAGGAATTCTCTCCCCCTTCCACTTCTCTAGAAGGGCAAATGGAGATCTTGATATCACCATGAAGATACTCTATTGCGGGATATGCCATGGAGATGTTCATTTTGCCAAGAATGAGATAGGCCGTCATATCGAATATCCCATGGTTCCCGGACACGAGATAGTGGGTGAAGTGATAAAGATCggcaaaaatgtcaaaaaattcaaaattggaGACATAGCGGGAATCGGTCCAATATGTGGTTCATGTGGTACATGTTCCCATTGCTCCAAAAGTTGGGAGAATTCTTGCCCCAAAAGAATTTTAACAtacaatggacatgactacgaTGGATCAACAACCTATGGAGGatactcaaataaaatagtggttAATGAAAATTATGCTATTATAATTCCAAAAGGGTTACCATTAGAAAGTGCAGCTCCATTGTTATGTGCTGGATTAACAGTTTATAGTCCAATGATTCATCATGGATTGTGTCAAAGTGGACAACATTTGGGTATTGTTGGGTTAGGTGGACTTGGTCATGTTGCAGTCAAGTTTGCTAAGGCTTTTAATATGAAAGTTACAGTGATAAGTACTTCTCCTGGAAAGAAGAAGGAAGCTTTGGAAAGACTTGGTGCTGATTCTTTCTTGCTCATCAATGATGAACAACAATTGcagGAAGCAAAAGACACAATGGATGGCATCATAGACACAGCTTCAGGCCCTCACTCACTGCATCCATTAATTGATATGTTGAAGTTATatggaaaattgattttagtagGTGCATCAATTACACCTCCTGTCTTACCATATATGCCATTGATGCTTGgGAGGAAGATAATTGCTGGTAGTGCTGCTGGAGGAATGAAAGAGAGCCAAGACATGATTAATTTTGCAGCAAAGCACAATATCACAGCAGATATAGAAGTGATTTCTATGGATTATGTGAACACTGCTTTTGAGAGActtgaaaaaaatgatgttaAATACAGATTTGTCATTGATGTGGCTAATACTCTTAATTAG 1080 0.3574 MANTLSNENEVPAFGWAARDSSGILSPFHFSRRANGDLDITMKILYCGICHGDVHFAKNEIGRHIEYPMVPGHEIVGEVIKIGKNVKKFKIGDIAGIGPICGSCGTCSHCSKSWENSCPKRILTYNGHDYDGSTTYGGYSNKIVVNENYAIIIPKGLPLESAAPLLCAGLTVYSPMIHHGLCQSGQHLGIVGLGGLGHVAVKFAKAFNMKVTVISTSPGKKKEALERLGADSFLLINDEQQLQEAKDTMDGIIDTASGPHSLHPLIDMLKLYGKLILVGASITPPVLPYMPLMLGRKIIAGSAAGGMKESQDMINFAAKHNITADIEVISMDYVNTAFERLEKNDVKYRFVIDVANTLN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01320 359 Pfam Alcohol dehydrogenase GroES-like domain 39 151 IPR013154 -
Tsu05g01320 359 Gene3D - 16 354 - -
Tsu05g01320 359 PANTHER ALDEHYDE REDUCTASE 1 359 - -
Tsu05g01320 359 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 72 86 IPR002328 GO:0008270|GO:0016491
Tsu05g01320 359 SMART PKS_ER_names_mod 23 352 IPR020843 GO:0016491
Tsu05g01320 359 SUPERFAMILY GroES-like 21 186 IPR011032 -
Tsu05g01320 359 Pfam Zinc-binding dehydrogenase 195 317 IPR013149 -
Tsu05g01320 359 Gene3D - 168 324 - -
Tsu05g01320 359 CDD CAD1 14 353 - -
Tsu05g01320 359 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 1 359 - -
Tsu05g01320 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 322 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01320 Tsu-Chr5 12004821 12008161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01320 13 358 Monolignol Biosynthesis Gene Families AT2G21890 57.349 2.08e-139 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01320 - - fve:101301572 492.271