Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01316 ATGAAGATGGGACGTGCCATGAATAAAAGGTTTCAATTGTTTTTGTGGTTTAGAATGGTTTTGCAACTCAGTTTCATTTTTGGTGCCTATTCTGAGCATATATCATTCAGGAGAAGCCTAAGTAGTGCTCAATCTCCAGTCACTCTTGTGactaatcaaattcaaaatcaaaattctccACAgGTGGTGATTAGCAATGGCATCTTTAACCTCACATTGGCAAATCCTGGGGGGTTTGTCACAGCAATATCATATTCTGGAATTGAGAATGTACTTGAAGGTGGAAATGAAGATATTGATAGAGGgtacTTTGACGTTGTTTTTGGCAAAACTTTTCAAAGAGTTCACGGGACAAGTTTCACCGTCATAACAAGGAATGAAAATATAGTGGAGGTTTCATTTTTAAGGACATGGCAACCTTCCATGGATAGTTCAAGTGTCCCTATAAACATAGACCAAAGGTATATAGTACGAAAAGGTGATTCAGGATTTTATACTTACGTGATATTTGAGCGACCAAAAGGATTTCCTGCTATATCAGTTGATCAAATAAGGACCGTTTTTAAGCCAAAAGAAAACTTgTTCAACTATATGGCAGTATCAGATATTATACAAAGAAGAATGCCACTTATGAAAGATAGAGAATCAGGTCAACCTTTAGCATTTCCTGAAGCAGTTCTCTTAACAAATCCAACTGATCCACAATTTAAAGGACAAGTGGATGATAAATACCAATACTCAAGTGAAAACCAATACAACCAAGTAAATGGATGGATTACTGCAGATTCTGAAAAGCCCGTGGGCTTTTGGATCATAACACCAAGTAATGAGTTCCGCAATGGTGGGCCTGTAAAGCAAGACCTCACATCTCATGTTGGCCCAATTTGTCTCTCTATGTTTGTGAGCACCCACTATGCTGGCAAAACGGTAGCTATGGAATTCAAAGAAGGAGAAGCTTATAAAAAGGCCTTTGGTCCTATTTTTGTTTACTTAAATTCTGCACCAAGTAAAGATAAATTCAAATCTCTATGGTCAGATGCTAAACAAAAGCTATCAAATGAAATCAAAAGTTGGCCTTATAATTTCATTGCATCAAAAGATTTCATTCCACCTAATCAACGGGGAACAGTATCGGGACGTTTACAAGTCCAAGACGGGGCAAACAAACCTCAAAATGCTAACAATGCTTACATTGGTCTAGCATTGCCTGGACCTGCAGGATCATGGCAGAGAGAAAGCAAGGGCTATCAATTTTGGATCCGATCAGACCAAAATggaaattttcttataaaaaacatTGTTCCTGGGGTATACAACTTATTTGCATGGGTTCCTGGCTACGTTGGTGATTATGTATATAATCAACAAATTACAATTAAACCAGGAAGCACCATCAACTTGAATTCACTTGTATATCATCCTCCAAGAAATGGCCCAACTCTTTGGGAAATTGGCATTCCAGATCGCTCAGCCGGCGAATTTTATGTACCAGAACCTTACCCTAACCTCATAAACAAATTATTCGTGAACGACAACAAAGACAGATATAGGCAATACGGAATATGGAGTCGTTACACCGATTTACATCCAAAAAACGATCTTGTTTACACAGTTGGCGTCAGTAAATGGGAAAAGGATTGGTTTTTCGCTCATGTTCCAAGGATTGTAGGAAATAAaacatttgaagcaaccacatGGAGTGTTGTATTTAAACTTGAAAATGTATTGCCTGGAAACTATACATTACAATTGGCCCTTGCAAGTGCCTCTAATGCTGAAGTTCAGGTTTGGTTCAATAAGATGAGCGCTAACCATCCTTACTTCACGACACATCGAATAGGCGACGACAATGCGATACCAAGGCATGGAATCCATGGATTATATTGGTTCTTTACCATAGAGATACCTAGTGTTAATTTGGTGAAAGGAATCAATACGGTATATTTGAGACAACCAAGATTTCAATCATTTTTTCAAGCAGTTCTATATGATTATATCCGTTTAGAGAGTCCATCAACTCCCTTAAATGTGTGA 2034 0.3687 MKMGRAMNKRFQLFLWFRMVLQLSFIFGAYSEHISFRRSLSSAQSPVTLVTNQIQNQNSPQVVISNGIFNLTLANPGGFVTAISYSGIENVLEGGNEDIDRGYFDVVFGKTFQRVHGTSFTVITRNENIVEVSFLRTWQPSMDSSSVPINIDQRYIVRKGDSGFYTYVIFERPKGFPAISVDQIRTVFKPKENLFNYMAVSDIIQRRMPLMKDRESGQPLAFPEAVLLTNPTDPQFKGQVDDKYQYSSENQYNQVNGWITADSEKPVGFWIITPSNEFRNGGPVKQDLTSHVGPICLSMFVSTHYAGKTVAMEFKEGEAYKKAFGPIFVYLNSAPSKDKFKSLWSDAKQKLSNEIKSWPYNFIASKDFIPPNQRGTVSGRLQVQDGANKPQNANNAYIGLALPGPAGSWQRESKGYQFWIRSDQNGNFLIKNIVPGVYNLFAWVPGYVGDYVYNQQITIKPGSTINLNSLVYHPPRNGPTLWEIGIPDRSAGEFYVPEPYPNLINKLFVNDNKDRYRQYGIWSRYTDLHPKNDLVYTVGVSKWEKDWFFAHVPRIVGNKTFEATTWSVVFKLENVLPGNYTLQLALASASNAEVQVWFNKMSANHPYFTTHRIGDDNAIPRHGIHGLYWFFTIEIPSVNLVKGINTVYLRQPRFQSFFQAVLYDYIRLESPSTPLNV 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01316 677 Pfam Rhamnogalacturonate lyase family 41 240 IPR010325 -
Tsu05g01316 677 CDD RGL4_N 58 339 - -
Tsu05g01316 677 Gene3D - 53 344 IPR014718 GO:0030246
Tsu05g01316 677 Pfam Polysaccharide lyase family 4, domain III 480 668 IPR029411 -
Tsu05g01316 677 CDD RGL4_M 373 470 IPR029413 -
Tsu05g01316 677 Pfam Polysaccharide lyase family 4, domain II 394 467 IPR029413 -
Tsu05g01316 677 Gene3D - 369 469 - -
Tsu05g01316 677 SUPERFAMILY Galactose-binding domain-like 477 669 IPR008979 -
Tsu05g01316 677 CDD RGL4_C 482 669 - -
Tsu05g01316 677 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 54 672 - -
Tsu05g01316 677 SUPERFAMILY Starch-binding domain-like 369 469 IPR013784 GO:0030246
Tsu05g01316 677 SUPERFAMILY Galactose mutarotase-like 57 335 IPR011013 GO:0003824|GO:0005975|GO:0030246
Tsu05g01316 677 Gene3D - 478 669 - -
Tsu05g01316 677 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 54 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01316 Tsu-Chr5 11962935 11968316 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01316 47 672 Polysaccharide Lyase AT1G09890 52.351 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01316 K18195 - gmx:100781089 866.3