Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01312 ATGGGAAGGGGAAAGATTGTGATAAGAAGGATCGACAATTGTACAAGTAGGCAAGTGACTTTCTCAAAGAGGAGAAAGGGATTGATCAAGAAAGCCAAAGAGTTAGCAATCTTATGTGATGCACAAGTTGGACTTTTTATATTCTCCAGCACTGGAAAGCTTTATGAATATGCAAATACCAGCATGAAATCAATGATTGAGAGATATAACATTTGCAAGGAAGACCAACAAGTGACAAATCAAGAATCTGAACTCAAGTTTTGGCAAAGGGAAGCAGACATTTTAAGGCAGCAACTACAGGCTCTACAAGAAAATCATCGGCAAATGATGGGAGAACAGCTTTACGGTTTGAGTATCAAAAACCTACAAGATTTAGAGTGTCAACTGGAACTGAGTCTGGAAGGAGTTCGCATGAAAAAGGCCGaaaactcatcaaatattttgtttcgATTTCCTCATATACAGGGAAATCTAATCCATCAAGAAAATGTGGAACTCTATAAGAAGGTCTATGGCACATCAGATACAGCAGCAACCGCAACAAGCAAAAACGCATTTGCTCAATTTCCGTATGGTGTTTGCGAAGGAGGAGAATGTCCACAAACATTATTTAACCTTCAGTTATGTCTACCTGAGCAAGAACAGTACTGTGAGACCTCAGGCAGTGGAAGTGCAACAAAATGA 684 0.3845 MGRGKIVIRRIDNCTSRQVTFSKRRKGLIKKAKELAILCDAQVGLFIFSSTGKLYEYANTSMKSMIERYNICKEDQQVTNQESELKFWQREADILRQQLQALQENHRQMMGEQLYGLSIKNLQDLECQLELSLEGVRMKKAENSSNILFRFPHIQGNLIHQENVELYKKVYGTSDTAATATSKNAFAQFPYGVCEGGECPQTLFNLQLCLPEQEQYCETSGSGSATK 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01312 227 Pfam K-box region 79 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu05g01312 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu05g01312 227 Gene3D - 14 109 IPR036879 GO:0003677|GO:0046983
Tsu05g01312 227 ProSiteProfiles K-box domain profile. 85 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu05g01312 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu05g01312 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 172 - -
Tsu05g01312 227 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Tsu05g01312 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu05g01312 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu05g01312 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu05g01312 227 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 172 - -
Tsu05g01312 227 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Tsu05g01312 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu05g01312 227 Coils Coil 78 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01312 Tsu-Chr5 11909456 11918145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01312 1 216 MADS-box Gene Family AT4G37940 58.222 1.62e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu05g01312 K-box 8.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01312 K09264 - gmx:100795778 295.819