Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01307 ATGCCATTTCTTGCACTCCAAGCTTTAACTTATGCAGTCATTGTTTGGTTTGCTTTACAACTTAGAGGCCCTTTTATATACTTCTTCCTTGTTCTCTTCATTTCTCTTCTTTCCACAAATTCGTTTGTTGTGTTTGTGAGTTCTGTGGTTCCAAACTACATCTTGGGCTATGCTGCAGTCATTGCCTTCACTGCATTGTTCTTCTTGTTCTGTGGATACTTCTTGAGCAGCGAAGATATTCCGAAATATTGGCGTTGGATGAATAAGATTTCGACAATGACATATCCTTATGAAGGACTCTTGATGAATGAGTATCAAACTAATGTTACTTTTGGGAATAATGATGGTGTACCTATTACTGGTTATGATATCTTGCATAGTCTTCATATTGGTATTGAAGAGGTTAAGAAAAGGAACAATGTGCTTATAATATCAGCTTCTTCTGCAACTGAAGGGTTTAAGAGTATAGCATGCTGTGCTGATTCAGATTACACAGATCTATTGACAACCTTAAATTATACAACAGATTACCATTGGTACTCTGACAAAAGAGGTTGCAGACAAATACCCGATATTGTGTTAAGCCACAGAAGCAATGAAAACGTTCGAATGTTTGATATAGATGAAGGAAAGAGATGTTACAAATTGTCAACAATTAAGGATCAAGTATATTTGATAAGGGGAATATTTCCATTTGATAGTTCAAATTCTTCGTTTTATGTTTCAGTTGGGGTAACAGAACTAGGCGAAGTAAGATCGTCTAGGCTTCAAGACTTTGAAATTGAGGGAGTTTTCAAAGCCACCAAAGACTACATAGATTTTTGTGTATTGAAGGAGGACGTCAATCCCTTTATTTCTCAGCTTGAATTACGACCATTACCTGAAGAATACCTACATGATTTCGATACCAGTGTTTTAAAACTGATAAGCAGAAATAATCTTTGCGGCACAAAAGATGAAATCAGGTTTCCAGTTGACCAAAACGATAGAATCTGGAAAGCAACTTCAACTTCATCATCTGCCCTTCCACTGTCTTCCAATGTCAGCAGTGTTGACCTCAAAGGCAGTGTGACACCTCCTCTAGAAGTCCTACAAACAGCTCTTACTCACCCTGAGCAATTGGTGTTCATCCATGATGACCTTGAGACCGATGATTATGAATACTCTGTGTTTCTCTACTTCCATGAGTTAAATAGCACTCTCAAAGCAGGAGAAAGGGTGTTTGACATCTATCTAAACAATGAGATTAAAAAGGCGGGTTTTGATGTACTGGAAGGAGGATCCAAGTACAATTACACTGTCTTGAACATTTCAGCAAATGGATCACTCAATATAACCTTAGTCAAAGCATCTGGATCTAAGTTTGGACCCTTTTTGAATGCCTATGAAATCCTGCAGGCACGACCATGGATCGACGAGAGCAACCAAACAGATCTGgtagttattcagaagatgagaGAAGAACTGCTGCTGCAAAACCAAGACAATGAAGCATTGAAGAGTTGGAGTGGAGACCCTTGTATGCTTTTCCCATGGAAGGGAATCGAATGTGATAGTTCAAATGGTTCATCTGTTATCACTAAGCTGGATCTTTCCTCCAACAATCTCAAAGGAACAATTCCCTCCAGTGTCACTAAGATGAACAATTTACAAATACTGAACCTGAGCCACAACCATTTTGATGGTTATATCCCCTTGTTTCCACCGTCCTCCTTGCTGATATCAGTAGATCTGAGCTACAATGACCTTATGGGACAGCTTCCAGAATCCATTATCTCACTGCCACATTTAAAATCATTATATTTTGGCTGCAATCAGCACATGAGCGACGAGGATCAAGCCAAATTGAACAGTTCACTAATCAAGACAGATTATGGGAGATGCAAAGCAAAAAAACCGAAATTTGGACAAGTTTTCGTGATTGGAGCTATTACAAGTGGATCGGTTTTGATTACTTTGGCTGTTGGAATTCTTTGTGTTTGCCGTTATAGACACAAGTCAATTCCTTTGGAAGGATTTGGTGGAAAGAACTACCCAATGAATATAATTTTCTCATTGCCAAGCAAAGACGATTTCTTCATAAAGTCTGTATCAGTTAAACCGTTCACTTTGGAGTATATAGAACTGGCTACAGAAAACTACAAAACTTTGATAGGTGAAGGAGGATTTGGCTCTGTTTACCGAGGCACTTTAGAAGATGGTCAAGAAGTGGCAGTGAAAGTCCGTTCGGCAACATCAACTCAGGGAACCCGAGAATTCGATAACGAGCTAAATCTACTTTCAGCTATACAACATGAGAACTTGGTGCCTCTTCTTGGTTACTGTAATGAGTATGATCAACAAATTCTCGTGTATCCTTTCATGTCCAATGGCTCTTTGCTAGATAGACTATATGGGGAAccagcaaaaagaaaaatattagacTGGCCAACTAGACTCTCTATTGCTCTAGGTGCAGCTCGAGCAGGTTTGGCATATCTTCACACATTTCCTGGTCGCTCTGTAATACATAGGGACGTAAAATCAAGCAATATACTGCTTGATCATAGCATGTGTGCTAAGGTTGCAGATTTTGGGTTTTCAAAATATGCTCCCCAGGAAGGAGACAGTTATGTCTCCCTTGAAGTAAGAGGAACAGCAGGGTATCTGGATCCAGAGTACTACAAAACCCAGCAATTATCTGAAAAGAGTGATGTTTACAGCTTTGGCGTGGTTCTACTGGAAATTGTAAGTGGAAGGGAACCTCTCAACATAAAGAGACCACGGATTGAGTGGAGCTTGGTTGAATGGGCTAAACCATACATAAGAGCATCAAAGGTGGATGAAATTGTAGATCCTGGCATCAAGGGAGGATATCATGCAGAGGCACTATGGAGAGTGGTGGAAGTAGCACTGCAATGTCTTGAACCCTACTCAACATATAGGCCATGCATGGTTGACATTGTCCGCGAGTTGGAGGATGCTCTCATTATCGAAAACAATGCATCTGAATACATGAAATCCATTGACAGCCTCGGAGGATCCAACCGCTACTCAATTGTTATGGACAAAAGAGCACTGCCCTCAACTACATCTACAGCAGAATCAACCATCACAACCCAAACCTTATCACACCCTCAACCAAGATAG 3129 0.396 MPFLALQALTYAVIVWFALQLRGPFIYFFLVLFISLLSTNSFVVFVSSVVPNYILGYAAVIAFTALFFLFCGYFLSSEDIPKYWRWMNKISTMTYPYEGLLMNEYQTNVTFGNNDGVPITGYDILHSLHIGIEEVKKRNNVLIISASSATEGFKSIACCADSDYTDLLTTLNYTTDYHWYSDKRGCRQIPDIVLSHRSNENVRMFDIDEGKRCYKLSTIKDQVYLIRGIFPFDSSNSSFYVSVGVTELGEVRSSRLQDFEIEGVFKATKDYIDFCVLKEDVNPFISQLELRPLPEEYLHDFDTSVLKLISRNNLCGTKDEIRFPVDQNDRIWKATSTSSSALPLSSNVSSVDLKGSVTPPLEVLQTALTHPEQLVFIHDDLETDDYEYSVFLYFHELNSTLKAGERVFDIYLNNEIKKAGFDVLEGGSKYNYTVLNISANGSLNITLVKASGSKFGPFLNAYEILQARPWIDESNQTDLVVIQKMREELLLQNQDNEALKSWSGDPCMLFPWKGIECDSSNGSSVITKLDLSSNNLKGTIPSSVTKMNNLQILNLSHNHFDGYIPLFPPSSLLISVDLSYNDLMGQLPESIISLPHLKSLYFGCNQHMSDEDQAKLNSSLIKTDYGRCKAKKPKFGQVFVIGAITSGSVLITLAVGILCVCRYRHKSIPLEGFGGKNYPMNIIFSLPSKDDFFIKSVSVKPFTLEYIELATENYKTLIGEGGFGSVYRGTLEDGQEVAVKVRSATSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYGEPAKRKILDWPTRLSIALGAARAGLAYLHTFPGRSVIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVYSFGVVLLEIVSGREPLNIKRPRIEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVMDKRALPSTTSTAESTITTQTLSHPQPR 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01307 1042 CDD STKc_IRAK 718 986 - -
Tsu05g01307 1042 Pfam Malectin-like domain 161 465 IPR024788 -
Tsu05g01307 1042 Gene3D Ribonuclease Inhibitor 477 630 IPR032675 -
Tsu05g01307 1042 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672|GO:0006468
Tsu05g01307 1042 SUPERFAMILY L domain-like 497 608 - -
Tsu05g01307 1042 Gene3D Transferase(Phosphotransferase) domain 1 788 1005 - -
Tsu05g01307 1042 Gene3D Phosphorylase Kinase; domain 1 684 787 - -
Tsu05g01307 1042 PANTHER OS05G0525400 PROTEIN 197 1003 - -
Tsu05g01307 1042 SMART serkin_6 712 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01307 1042 Pfam Protein tyrosine and serine/threonine kinase 715 985 IPR001245 GO:0004672|GO:0006468
Tsu05g01307 1042 Gene3D - 311 468 - -
Tsu05g01307 1042 Pfam ABC-2 type transporter 1 105 IPR013525 GO:0016020|GO:0140359
Tsu05g01307 1042 ProSiteProfiles Protein kinase domain profile. 712 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01307 1042 PANTHER OS07G0107800 PROTEIN-RELATED 197 1003 - -
Tsu05g01307 1042 SUPERFAMILY Protein kinase-like (PK-like) 692 985 IPR011009 -
Tsu05g01307 1042 ProSitePatterns Protein kinases ATP-binding region signature. 718 740 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01307 Tsu-Chr5 11862409 11872724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01307 147 992 Receptor kinase-like Gene Family AT1G67720 33.824 2.17e-129 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Tsu05g01307 Malectin_like 6.2e-42 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01307 - - gmx:100781986 1412.51