Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01297 ATGGAGCTTTCTCAACTTGGTTTTCTTGAAGAGCTACTAGCTCCAAGAAAAGACACATGGAATGCTTTATCAACTGGTTTGAATGAACTATTACTCCCTAATGGTTGGACCTTTGACTCATTTGATGAAAATCTACTCATAAATCCATCTTTAAATCCATCATTTGCTTCATTCTCAACACCATTAGACCATAGATTTGAATGTCCTTATGGAACTGATGCTACAGCATCATACCCTTTTGTTGATGGGTTTTCAGTGCCAGAGCTTGATGATTCAGCACCAATTTTACCTCATGAAGGTGTTGAAGAGTTTGGTTTTGTTGGAAGTGAGAACAAGAACTTGGAACAAGGTAAAATTAGTTGCAAAGTTGAGGAACAAGTGAGTGAGATTCCTGTTTTTAACATGGGTTTATGTGGTGAGAAAAAAGCTAAGTCTAAAAGGGTTGAAGGACAACCTTCAAAGAATCTTATGGCtgaaagaaggagaagaaagcgTTTGAATGATAGACTTTCCATGCTTAGGTCAATTGTCCCTAAAATCAGCAAGATGGACAGGACATCAATTCTTGGAGATACAATTGATTACATGAAAGAGCTTCTAGAAAGGATTAATAAGTTGCAAGAAGAAATGGATGAAGAAGgaacaaatcaaataaacattTTGGGAATTTCTAAGGAGTTAAAGCCAAATGAAGTAATGGTAAGAAATTCCCCCAAGTTTGATGTTGAGAGGAGAGAGCAGGACACAAGGATTAGTATCTGCTGTGCTACAAAGCCAGGATTATTACTATCAACTGTGAACACATTGGAAGCATTAGGCCTTGAGATTCATCAGTGTGTTATAAGCAGTTTCAATGATTTTTCATTGCAAGCATCGTGCTCAGAGGTAAATGGTCAGAGAAATTGTATGAGCCCTGAAGAGATAAAGCAATCACTATTCAGGAATGCAGGTTATGGTGGGAGATGTCTCTAA 972 0.3621 MELSQLGFLEELLAPRKDTWNALSTGLNELLLPNGWTFDSFDENLLINPSLNPSFASFSTPLDHRFECPYGTDATASYPFVDGFSVPELDDSAPILPHEGVEEFGFVGSENKNLEQGKISCKVEEQVSEIPVFNMGLCGEKKAKSKRVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERINKLQEEMDEEGTNQINILGISKELKPNEVMVRNSPKFDVERREQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEVNGQRNCMSPEEIKQSLFRNAGYGGRCL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01297 323 SMART finulus 156 205 IPR011598 GO:0046983
Tsu05g01297 323 Coils Coil 189 216 - -
Tsu05g01297 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 213 IPR036638 GO:0046983
Tsu05g01297 323 Pfam Helix-loop-helix DNA-binding domain 156 199 IPR011598 GO:0046983
Tsu05g01297 323 Gene3D - 140 215 IPR036638 GO:0046983
Tsu05g01297 323 CDD ACT_UUR-ACR-like 249 290 - -
Tsu05g01297 323 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 323 - -
Tsu05g01297 323 PANTHER TRANSCRIPTION FACTOR BHLH61-RELATED 2 323 - -
Tsu05g01297 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01297 Tsu-Chr5 11784394 11786702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01297 11 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 48.703 9.84e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu05g01297 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01297 - - gmx:100806571 524.242