Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01286 ATGTCTCCGGCAGTGGTGGTTACGGAGGAGGAAGGGCGGAGCAAACTGGTTTCTGCTTCCTCACCATCCTTAGACTGTTTCTCTCAGAATGGTGTTGTTGATTTGAAAGAACGGAATTACTTGGGATTGTCAGATTGTTCATCAGTGGACAGTTGTGATTCAACTCTCCCGAGCTTGTGTGATGAGAAAAaagtgaatttgaatttgaaagctACTGAGTTGAGGTTGGGTCTTCCTGGATCTCAATCGCCTGAAAGGGATTTGGATTTTTATTCAACAAAGCTTGATGAGAAACCGTTGTTCCCTTTGCTTCCTGCAAAAGATGGAATCCAGAAAACTGTGGTTTCGGGTAACAAGAGAGGATTTGCTGATACTGTTGATGGGTTTTCTCAGGGGAAGTTTAATGGTAATACAGGGATTAACGTAATGCTATCGCCTAGACCTGTTGTAGCTCACCCAAACACAGTGAAAGAAATGCCGAGTAAGGTGTTGCAAGAAAGGCCTTGTGCAGCTAGAGGAACTACTGGTCATAATCATGCAGGTGCTGCTTCTATCGCTGGCTCTCAGCCAGCATCTAAGGCACAAGTTGTTGGGTGGCCTCCTATTAGATCATTTAGGAAAAACTCCATGGCGACCGCTTCCAAGAACAACAACGATGAAGTGGATGGAAAACCAGGTCCCACTGCACTCTTTGTGAAGGTTAGCATGGATGGTGCTCCCTATCTTAGGAAGGTAGATCTAAGAACTTATACAACATATCAGGAACTATCTTCTGCTCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGCCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGATGAGTGAGAGCAAGCTAAGGGACTTTTTGCATGGTTCAGAATATGTTCTCACCTAtgaagataaagatggagaCTGGATGCTTGTAGGGGATGTACCGTGGGAGATGTTCATTGATACTTGCAGAAGACTCAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGTCAATGGAAAAATCCAAAAGCAGGAGTTAG 1050 0.4343 MSPAVVVTEEEGRSKLVSASSPSLDCFSQNGVVDLKERNYLGLSDCSSVDSCDSTLPSLCDEKKVNLNLKATELRLGLPGSQSPERDLDFYSTKLDEKPLFPLLPAKDGIQKTVVSGNKRGFADTVDGFSQGKFNGNTGINVMLSPRPVVAHPNTVKEMPSKVLQERPCAARGTTGHNHAGAASIAGSQPASKAQVVGWPPIRSFRKNSMATASKNNNDEVDGKPGPTALFVKVSMDGAPYLRKVDLRTYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMMSESKLRDFLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRLKIMKGSDAIGLAPRSMEKSKSRS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01286 349 Pfam AUX/IAA family 72 340 IPR033389 -
Tsu05g01286 349 Gene3D - 226 342 - -
Tsu05g01286 349 ProSiteProfiles PB1 domain profile. 229 333 IPR000270 GO:0005515
Tsu05g01286 349 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 20 342 IPR003311 GO:0005634|GO:0006355
Tsu05g01286 349 SUPERFAMILY CAD & PB1 domains 227 330 - -
Tsu05g01286 349 PANTHER AUXIN-INDUCED PROTEIN 20 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01286 Tsu-Chr5 11691091 11694969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01286 228 334 B3 DNA Binding Superfamily AT5G37020 31.776 1.40e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tsu05g01286 AUX_IAA 3.6e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01286 K14484 - gmx:547502 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01286 05 11691091 11694969 Tsu04g02981 04 36686824 36691805 PCT