Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01270 ATGAATCTTTGGAGCGACGATAACTCCTCAGTAATGGAGGCTTTCATGACCTCCTCCGATTTATCAACCTTATGGCCATCACAACCACCGCCTTCATCATCACAACCACCACAAACCACCACCGGTTTCAACCAAGACACACTCCAACAACGTCTTCAAGCTTTAATCGAAGGCTCTTCCGAAATCTGGACTTACGCTATCTTCTGGCAACCGTCATATGATTATTCCGGTTCTTCTCTTCTAGGTTGGGGTGACGGTTATTACAAAGGCGAAGAAGATAAGTCGAAATCAAAATCTAAAGCAACTTCACCTGCTGAACAAGAACACCGTAGAAAAGTTCTCCGTGAACTTAATTCTTTAATCTCTGGTAATCCTGTAACGGAAGAATCTTCCGTTGATGAAGAAGTTACTGATACGGAGtggttttttttagtttctatgACTCAATCTTTTGTTAACGGAAGTGGAATTCCTGGACAAGCTTATTTTAATTCAACTCCGGTTTGGTTAGTCGGAGGTGAGAATCTCGCTGTCTCGATTTGCGAGAGGGCGAGACAAGGTCAGGAATATGGTTTACAGACGTTGGCGTGTATACCGTCGGCGAACGGTGTTTTAGAGCTTGGATCTACTGAATTGATTTATCAGAATAACGATCTGATGAATAAAGTTAAgatgttgtttaattttaataataattttgattttggatctTCTTGGCAATTaggtagtaataataataataattctacTGTAATTACTCATCAAGGTGAAAATGATCCTTCTTCAATTTGGCTTAATGATCCTGAAACTAGAGATTCTGTTGATAATAATTCTCTTGCTGCaacaaccacaaccacaacaaaCACTTCAATTTCAATTCCAAGTCATCATCAGAATCAGCAACATCATCAGAACAATAGCAATAATCAGAGTGTGAGTGTGACGAAGACGGTTCAATTTGAAACTCACGGTTCAAGTAATTTAACAGAAGCTCCTAGTGTTGTTCATGTTTCAAGTAAGCAGAATCAACAAGGATTGTTTACTAAGGAAATGAATCTTTCGGAATACGGTGGGAGTAATGgtcagcagcagcagcagcgtTCGTTGAAGCCGGAGTCTGGTGAGATTTTGAGTTTTGGTGGTGAGAGTAAAAAGAGTTCTTATGTTGCTAATAATGGAAATTcgaattcaaattttttctcTGGTCAATCACAGTTGGTTTCGGTTGCTGAGGAGAATGGGAATGGGAAGAAGAGGTCTCCGAATTCGAGAGGAAGCAATAATGATGATGGAATGCTATCTTTTACTTCTGGTGTAATTGTTCCGCCGGTGAATTTGAAATTCTCTGGTGGTGGTACGGGTGGTGGTGATTCGGACCATTCGGATCTGGAAGCTTCAGTGGTGAAGGAGGTGGATAGTAGTCGTATGGTAGAGCCGGAGAAGAGGCCGAGGAAAAGAGGGAGGAAGCCGGCGAATGGAAGAGAGGAACCGTTGAATCATGTTGAAGCTGAGAGACAAAGAAGAGAGAAGCTGAATCAGAGGTTTTATGCTCTTCGTGCAGTTGTTCCTAATGTTTCAAAGATGGATAAAGCTTCACTTTTGGGTGATGCTATATCTTACATTACTGAGCTGAAAACAAAGCTTGTGAAAACTGAATCTGATAAAGATGAATTGGAAAAACAACTTGATGCAGTGAAGAATGAGCTTCAGAAAGTCAGTGAAAACTCGTCTCATCCACTGCCACAACCTCAACAACAAGTGCCCGATAAACCCTCTTCCAATCAAGCTTTAATAGATTTAGATATTGACGTGAAGATTATAGGTTGGGATGCAATGATAAGGGTCCAATGCAGTAAGAAAAACCACCCTGCAGCAAAGTTGATGGCAGCGTTGATGGAGCTTGACCTAGAAGTGCACCACGCAAGTGTTTCTGTGGTGAATGATTTGATGATACAACAAGCAACCGTGAAGATGGGGAGTCGTTTTTACACGCAGGAGCAGCTTCGGGCAGCATTGTCCTCTAAAGTTGGGGATGTTCAATAA 2043 0.3906 MNLWSDDNSSVMEAFMTSSDLSTLWPSQPPPSSSQPPQTTTGFNQDTLQQRLQALIEGSSEIWTYAIFWQPSYDYSGSSLLGWGDGYYKGEEDKSKSKSKATSPAEQEHRRKVLRELNSLISGNPVTEESSVDEEVTDTEWFFLVSMTQSFVNGSGIPGQAYFNSTPVWLVGGENLAVSICERARQGQEYGLQTLACIPSANGVLELGSTELIYQNNDLMNKVKMLFNFNNNFDFGSSWQLGSNNNNNSTVITHQGENDPSSIWLNDPETRDSVDNNSLAATTTTTTNTSISIPSHHQNQQHHQNNSNNQSVSVTKTVQFETHGSSNLTEAPSVVHVSSKQNQQGLFTKEMNLSEYGGSNGQQQQQRSLKPESGEILSFGGESKKSSYVANNGNSNSNFFSGQSQLVSVAEENGNGKKRSPNSRGSNNDDGMLSFTSGVIVPPVNLKFSGGGTGGGDSDHSDLEASVVKEVDSSRMVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKTKLVKTESDKDELEKQLDAVKNELQKVSENSSHPLPQPQQQVPDKPSSNQALIDLDIDVKIIGWDAMIRVQCSKKNHPAAKLMAALMELDLEVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRAALSSKVGDVQ 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01270 680 SMART finulus 501 550 IPR011598 GO:0046983
Tsu05g01270 680 CDD bHLH_AtAIB_like 492 568 - -
Tsu05g01270 680 Gene3D - 487 576 IPR036638 GO:0046983
Tsu05g01270 680 MobiDBLite consensus disorder prediction 410 436 - -
Tsu05g01270 680 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 48 227 IPR025610 -
Tsu05g01270 680 MobiDBLite consensus disorder prediction 410 434 - -
Tsu05g01270 680 MobiDBLite consensus disorder prediction 466 505 - -
Tsu05g01270 680 PANTHER MYC 41 677 IPR045084 GO:0003700|GO:0006355
Tsu05g01270 680 MobiDBLite consensus disorder prediction 247 310 - -
Tsu05g01270 680 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 495 544 IPR011598 GO:0046983
Tsu05g01270 680 MobiDBLite consensus disorder prediction 353 380 - -
Tsu05g01270 680 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 498 564 IPR036638 GO:0046983
Tsu05g01270 680 MobiDBLite consensus disorder prediction 572 592 - -
Tsu05g01270 680 MobiDBLite consensus disorder prediction 20 43 - -
Tsu05g01270 680 Coils Coil 541 575 - -
Tsu05g01270 680 MobiDBLite consensus disorder prediction 353 372 - -
Tsu05g01270 680 Pfam Helix-loop-helix DNA-binding domain 499 544 IPR011598 GO:0046983
Tsu05g01270 680 PANTHER TRANSCRIPTION FACTOR MYC2 41 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01270 Tsu-Chr5 11508716 11511434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01270 1 677 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 52.624 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu05g01270 bHLH-MYC_N 4.8e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01270 K13422 - gmx:100790168 782.326