Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01259 ATGGCAGCTTTAGAATCAGCCATAACTGTATTATTCACACCTCAACGTTTTTCAAATAACTACCATTTCCTACCTAAATCACCCGATTCCGTTAAACTCCATGCTTCCACTTCAATCCCTTATTCTTCTTCTACCATTTTCTCTCACAATCACAaacttcatttttcttcttcttcttcttcttccaaatcCCGAACATTCTGCTTTGCTTTACAAGAAGTAACAGAAGCAGCAATTGAAGAAGAAACAACAAAGCCATTAAACAACGTTAAGAAGAAGCTCTGTGTCTTTAACTTACCTTGGTCTCTGTCTGCACCAGACATCAAGGACCTCTTCGCCCAATGCGGAAATGTAATCAACGTCGAGATTATAAAGAGCAAACAAGGGAAGGGAAAAGGTTATACATTTGTTACTATGGATACAGGAGAAGAGGCTCAAGCTGTTGTCGATAAATTTAATGGTCATGAAATATCAGGCCGGATAATAAGGGTAGAGATCGCAAAGAGATTGAAGAAACCCTTTCCTCCAGCTCCTCCAGGTCCACCTCCTAATGACGCACGCCATCTAATTTATGCATCCAACCTTGCTTGGAAAGCAAGATCTACACATCTCAAAGACATCTTCACTGAGAATTTCAAAGAACCAGTTTCAGCCAGGGTTGTTTTTCAGACCGCTGACGGGAGATCTGCTGGGTATGGATTTGTTTCTTATCATACAAAGGAGGAAGCAGAGGCTGCCGTTTCTGCTTTGGAAGGGAAGGAGTTAATGGGACGACCACTTCGCGTAAAAATAAGTGAAAAGAAGGTTAAAAaagctgaaaatgaagaaggtgaagagCAAATTGCTGCAAGTGAAGAAAGCGAAGAGCCAATTGCTGAAAGTGGTGAAGGTGATGAACAGCAAGTTGAGAATGCTCAACCGGAAGAGTCATAA 933 0.3891 MAALESAITVLFTPQRFSNNYHFLPKSPDSVKLHASTSIPYSSSTIFSHNHKLHFSSSSSSSKSRTFCFALQEVTEAAIEEETTKPLNNVKKKLCVFNLPWSLSAPDIKDLFAQCGNVINVEIIKSKQGKGKGYTFVTMDTGEEAQAVVDKFNGHEISGRIIRVEIAKRLKKPFPPAPPGPPPNDARHLIYASNLAWKARSTHLKDIFTENFKEPVSARVVFQTADGRSAGYGFVSYHTKEEAEAAVSALEGKELMGRPLRVKISEKKVKKAENEEGEEQIAASEESEEPIAESGEGDEQQVENAQPEES 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01259 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 169 IPR000504 GO:0003723
Tsu05g01259 310 SUPERFAMILY RNA-binding domain, RBD 174 270 IPR035979 GO:0003676
Tsu05g01259 310 PANTHER CHLOROPLAST, PUTATIVE-RELATED 2 286 - -
Tsu05g01259 310 SMART rrm1_1 93 165 IPR000504 GO:0003723
Tsu05g01259 310 SMART rrm1_1 189 263 IPR000504 GO:0003723
Tsu05g01259 310 Coils Coil 267 287 - -
Tsu05g01259 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 267 IPR000504 GO:0003723
Tsu05g01259 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 162 IPR000504 GO:0003723
Tsu05g01259 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 261 IPR000504 GO:0003723
Tsu05g01259 310 Gene3D - 71 186 IPR012677 -
Tsu05g01259 310 SUPERFAMILY RNA-binding domain, RBD 91 179 IPR035979 GO:0003676
Tsu05g01259 310 MobiDBLite consensus disorder prediction 279 310 - -
Tsu05g01259 310 Gene3D - 187 292 IPR012677 -
Tsu05g01259 310 PANTHER OS02G0815200 PROTEIN 2 286 - -
Tsu05g01259 310 MobiDBLite consensus disorder prediction 266 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01259 Tsu-Chr5 11353098 11358386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01259 94 271 Eukaryotic Initiation Factors Gene Family AT4G34110 26.816 2.11e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01259 - - gmx:100793319 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01259 05 11353098 11358386 Tsu05g01259 05 11353098 11358386 ECH