Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01258 ATGGCTTCTCTTGGAAATCCAAAAGCTTGGGTTCCATATATGAACAACAAAGATTGTTCTCAAGGTTTTTGTAGCTTCTATTGTCCTCAATGGTGTTATGTAGTTTACCCTCCACCTCCTCCTTCACCCTTTGAATTCCCTGATGATGATTCAAGTACAAATTTCTCCCCTCTTGTTATAGCAATCATTGGAATCTTAGCAAGTGCTTTTCTTCTTGTAACTTACTACACCTTAATATCGAAGTACTGTGGCCGTAGAATATCATCATCGCAAAGTGAATCACGCGAAACAAACGATGAATTAGAagacaatcatcatcataaccCTTCAATCCATGAGCCATGGAATGCTTCAACAAATGGATTAGATGAAGCTTTGATTAAATCCATAACAGTTTGTAAGTACAAAAAGAATGATGGATTGGTCGATGTAACAGATTGTTCCGTTTGTCTCAACGAGTTTCAAGACGATGAAAGTATTCGACTTTTACCTAAATGTAGCCATGCTTTTCATTTACCTTGTATTGATACATGGCTCAAATCTCACTCAAATTGTCCTCTATGTCGCGCCACCATATTCGCCTTCAATGCTTCAAGTTCAAATGCAACACTTCATTTGCCAGCTCAAGTTATTGAACAATCTTCAAGGAATGAAGTTTCTTTAGAAAATCAACATTTGAATGAAATTTCAGCTGTTGAAAGAGACAATGAATTGGATGTGGTGGAAGAAGTTCCAATTCCGAAGACTGAATTCCGCGCTTTAAGTGATTTAGGAAATTTAAGAGGAAGGCATAATGTGATTGAGATTGGAGATAATGAAGGTTACCGTGAATCAATTCGAAGATCGGTTTCTATGGATCATTCATTCCAAAGTGATCTTTCACTTGTTGAAGATGTTAATATGCATATAAATCAAGAACAAGATTCTCAAGTTGAAAGTTCATCAAAGAGATTAAGAGGTGAAAGTGAAAGTAGTAAATCTAGCTATAGTAGAAAGGTTTTGCATTGTGTTTTAAGTCCAATTGCAATGAAGAGATCATTTTCTAGTGGGAGATTTTTCCTTAGTAGAAGTGGCAGAGGAAGGCTTGGAGTTTTGCCTAtctaa 1104 0.3569 MASLGNPKAWVPYMNNKDCSQGFCSFYCPQWCYVVYPPPPPSPFEFPDDDSSTNFSPLVIAIIGILASAFLLVTYYTLISKYCGRRISSSQSESRETNDELEDNHHHNPSIHEPWNASTNGLDEALIKSITVCKYKKNDGLVDVTDCSVCLNEFQDDESIRLLPKCSHAFHLPCIDTWLKSHSNCPLCRATIFAFNASSSNATLHLPAQVIEQSSRNEVSLENQHLNEISAVERDNELDVVEEVPIPKTEFRALSDLGNLRGRHNVIEIGDNEGYRESIRRSVSMDHSFQSDLSLVEDVNMHINQEQDSQVESSSKRLRGESESSKSSYSRKVLHCVLSPIAMKRSFSSGRFFLSRSGRGRLGVLPI 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01258 367 MobiDBLite consensus disorder prediction 93 116 - -
Tsu05g01258 367 CDD RING-H2_PA-TM-RING 146 189 - -
Tsu05g01258 367 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 358 - -
Tsu05g01258 367 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Tsu05g01258 367 SMART ring_2 147 188 IPR001841 -
Tsu05g01258 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 196 IPR013083 -
Tsu05g01258 367 MobiDBLite consensus disorder prediction 305 324 - -
Tsu05g01258 367 MobiDBLite consensus disorder prediction 93 110 - -
Tsu05g01258 367 SUPERFAMILY RING/U-box 127 194 - -
Tsu05g01258 367 Pfam Ring finger domain 146 189 IPR001841 -
Tsu05g01258 367 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 358 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01258 Tsu-Chr5 11350018 11351173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01258 1 197 C3H Transcription Factor Family AT3G03550 56.459 5.29e-71 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01258 - - gmx:100792267 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01258 05 11350018 11351173 Tsu05g01258 05 11350018 11351173 ECH
Tsu05g01258 05 11350018 11351173 Tsu04g02939 04 35723695 35724765 PCT