Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01251 ATGGGTAGGTCACCATGTTGTGATGAGATTGGTGTCAAGAAAGGGCCATGGAcacaagaagaagatgaaaagctTATTGATTATATCAACAAACATGGTCATGGAAATTGGGGAACACTTTCAAAACGTGCTGATTTGAATAGGTGTGGTAAGAGTTGTAGGTTAAGGTGGACAAATTATTTGAGGCCTGATATTAAGAGAGGGAAGTTCACTGATGAAGAGGAGAGAgttatcatcaatcttcattCAGTACTTGGAAATAAgtgGTCTAAGATTGCAGCTCATCTTCCGGGTAGAACCGACAACGAAATAAAGAATTTTTGGAAcacaaatataagaaaaaagcTTCTCAAGATGGGAATAGACCCTGAAACTCACAAACCAAGGACTGATTACAATCACCTCATGAATCTTTCCAACTTACTTGGTATATCAAATATAGGCAATACTTTTAGCAACAATCCTCTTGGTTTCCAACCAGATATCACTCACTTAGCCAAAATGCAATTGTTGCAAAATATGTTACAAATTATGAACACCAATAATTCATTTGGTAACATAGGTAATTATCCTTATAACCCTTTAGGAAATATTAATCCTAGCCTTAAtccattcaatttatttttgaatggaaCAAACACAATTCAAACTAAGGATCCATTAGTATTGAATGGTGGTGAAGAATATGCTATGATCCCTAATCTATATTCTCAAGGACAAAGTGAGGATATTTCAAAAGGTGGATCAAGTTTAGAAAGTATTGATTATAGCAAAATGAGAAACATTTCTTGTGAAAATCAAGAAGAAAATCTACTTCCTTCATTGGTTGCATCCTCTCCTAGAATAAGTACTTTCAAGCAAATGGAAAGTTGTAACAAAGCTCAAATGTCCATTGATGAGTCACCTTCAAACACAACCTTTGATGATTGGGAGAAGTTCcttgatgatgaatcaaacggCTCATATTGGAAAGAGCTTTTAGACTTGACTTCCACTTCTGCGTCACAAATTTCATGGTAG 1020 0.3206 MGRSPCCDEIGVKKGPWTQEEDEKLIDYINKHGHGNWGTLSKRADLNRCGKSCRLRWTNYLRPDIKRGKFTDEEERVIINLHSVLGNKWSKIAAHLPGRTDNEIKNFWNTNIRKKLLKMGIDPETHKPRTDYNHLMNLSNLLGISNIGNTFSNNPLGFQPDITHLAKMQLLQNMLQIMNTNNSFGNIGNYPYNPLGNINPSLNPFNLFLNGTNTIQTKDPLVLNGGEEYAMIPNLYSQGQSEDISKGGSSLESIDYSKMRNISCENQEENLLPSLVASSPRISTFKQMESCNKAQMSIDESPSNTTFDDWEKFLDDESNGSYWKELLDLTSTSASQISW 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01251 339 CDD SANT 69 112 IPR001005 -
Tsu05g01251 339 PANTHER MYB TRANSCRIPTION FACTOR 1 330 - -
Tsu05g01251 339 Gene3D - 13 66 - -
Tsu05g01251 339 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu05g01251 339 SMART sant 66 114 IPR001005 -
Tsu05g01251 339 SMART sant 13 63 IPR001005 -
Tsu05g01251 339 CDD SANT 16 61 IPR001005 -
Tsu05g01251 339 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu05g01251 339 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Tsu05g01251 339 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu05g01251 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 330 - -
Tsu05g01251 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu05g01251 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu05g01251 339 Gene3D - 69 116 - -
Tsu05g01251 339 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01251 Tsu-Chr5 11278833 11280600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01251 1 328 MYB Transcription Factor Family AT5G16770 47.701 8.35e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g01251 Myb_DNA-binding 5.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01251 K09422 - gmx:778082 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01251 05 11278833 11280600 Tsu05g01251 05 11278833 11280600 ECH