Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01247 ATGTGGTTTGGTCCAAACAACATCATGGCAGTGACTGCAATATTAGGAAACCAAACAGATAATTTCGCATTGCTCAAATTCAAAGAATCCATATCCAATGATCCATATAAAACTCTTGAATCGTGGAATACTTCCATCCGTGTATGCAAATGGAAGGGAGTCGAATGCAGTACCATGCATGAAAGAGTTACAGAGTTGAACCTAGAAGGATATCAGTTACATGGAACTTTATCTCCCTATGTTGGCAATCTCACTTTTCTGATAAATCTCAATCTTAGAAACAACAGTTTCTTTAGAGAAATCCCACCAGAACTTGGTCAGTTGTTACAATTGCAACAACTTCGTCTCGACCaaaatttgttttcaggtaaaaTTCCAACAAACTTGACATATTGCTCCAATCTCAAACACTTGAATTTGGGATATAACATTATAGTTGGCaaaataccaattgaaattggCTCTTTGAAAAAGCTTCAATCATTAGCCGTTGATAGAAACAAGTTAACCGGACGAATCCCTTCTGTCATAGGAAATCTTTCATGCttaacaagttttttctttactGATAACAAATTAAAAGGAGATATCCCACAAGAAATATGTCACCTCAAAAACATCACAACTTTAATGGTTGGTGTCAACAATTTGTCTGGTATAATTCCTTCTTGTCTTTACAATATCTCATCACTAATTAAGCTCTCAGTACCATTGAATAACTTTCATGGCTCTCTACCCCCCAACATGTTCCACACCCTCCCAAATCtccaaacttttgaatttggaGGAAATCGATTTTCAGGCACAATCCCCACTTCCATAATAAATGCATCTTCTACCTTGACATATTTTGATATCAGTCAAAACTATTTTGTCAGACAAGTTCCAATTCTAGGAAGGCTAAAAGATTTAAAATATCTGAATTTGGAAAAGAACAATTTAGGTAACAATTCATCTAaggatttagaatttttaaagtATTTGACAAATTGTAGTAAACTAGAAGTGCTTTCGAtatttagtaataattttggTGGTAATTTACCAAACTCTATAGGTAATATTTCTGTTGAACTTAAAAAACTATATCTTGGGGTTAATCAGATATCAGGAAAAATTCCAACAGGAATAGGACATTTAGTTGGCTTAATTATCTTGACCATGGATTTTAACAACTTTGAAGGAATTATTCCAACTACTTTTGAGAAGTTCCAAAAGATGCAAGTGTTAGATTTGGAAGTAAACAAGTTGTCAGGATATATACCACCCTTTATAGGAAATCTCAGTCAATTGTTTGAATTGGATTTGCATCTTAATATGTTTGTAGGAAATACTCCCCCAAGCATAGGAAACTCTCAAAAGTTACAATATCTTGATCTTTCTCAGAATATGCTTAGTGGAAGCATACCCTTAGagatttttaatcttttttctttgtcaagCTCATTGAACTTGTCACACAACTCTTTAAGTGGTAGCTTACCAAGTGAAGTGGGTATgctaaaaaatattgatatgctAGATGTCTCTGAGAATAATCTATCCGGTGATATTCCTAGAGCAATTGGTGAATGTGTAAGTTTAGAATACCTTCTTTTGCAAGGTAACTCCTTTAATGGAACAATACCTTCCTCTTTGGCTTCTCTCAAAGGTCTTCAATATTTAGACATTTCAAGAAATCAATTGTCTGGATTAATTCCTGATGTAATGCAAAATATATCTGATTTACAATATTTGAATGTTTCTTTTAACATGTTGGAAGGCGAGGTACCAACACACGGTGTCTTTGGAAATGTAACCCAAGTAGATGTTTTTGAAAACAATAAGCTTTGTGGAGGTATTTCACAACTGCATCTACCACCATGCCCTATCAAGGGTAGGAAACACAGTAAACACCATAAATTCAGGTTGATAGCAGTGATAGTTAGTgtgatttcttttcttctcatacTCTCATTTATTATAACTATCTACTTGATGaggaaaagaaacaagaaacgATCTTTTGATTCACCAACAATTGATCAGCTAGCTACAGTTTCATACCAAGACTTACATCGAGGAACGGATGGGTTCTCGACTAGAAACTTGATCGGATCAGGAAGTTTTGGTTCTGTGTACAGAGGAAATCTTTTGTTAGAAGATAATGTTGTTGCTGTGAAGGTCATGAACCTCCAAAAGAAGGGAGCTCACAAAAGTTTCATTGTTGAATGTAATGCACTCAAGAATATTAGACATCGAAATTTAGTTAAGATTTTAACATGTTGTTCTAGTATAGATTACAAAGGTCAGGAGTTTAAAGCTTTAGTTTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCCGATATTTTAAATTCAGAACATCCAACAACATTGAACCTTGGTCAGAGATTAAACATCATTATCGATGTTGCTTCTGTGTTACATTACCTTCATGAAGAATGCGAGCAATTAGTCCTTCATTGCGATCTAAAGCCAAGTAATGTCCTTCTTGATGAGGACATGGTTGCTCATGTGAGTGATTTTGGTATTGCAAGACTCATCTCGGCCATTGGTGGTACCTCACATAAGAATACTAGTACAATTGGAATAAAAGGAACCGTTGGCTATGCTCCTCCAGAGTATGGAGTGGGTTCCGAAGTGTCCAGATGTGGTGATATGTATAGCTTTGGAATCCTTGTGTTGGAAATGCTTACTGGTAGAAGACCCACTGATGAACTTTTTGAAGATGGTCAAAATCTGCATAACTTTGTTGTAAATTCATTTCCTGATGATCTTATAAAGATTTTGGACCCACATCTTGTACCAAGAGATGCAGAAGTAGCAATACAAGATGGAAACAGTGAGAATCTTATCCCAAGTGTAACGGAGTGcttagtttcactttttagGATTGGACTTATTTGCTCAATGGAATCACtaaaagaaagaatgaatattGTGGATGTCACTAGAGAGCTTAGTATAATCAGGAAGACCTTTCTTGCAGGTGAAACAAACTGA 3015 0.332 MWFGPNNIMAVTAILGNQTDNFALLKFKESISNDPYKTLESWNTSIRVCKWKGVECSTMHERVTELNLEGYQLHGTLSPYVGNLTFLINLNLRNNSFFREIPPELGQLLQLQQLRLDQNLFSGKIPTNLTYCSNLKHLNLGYNIIVGKIPIEIGSLKKLQSLAVDRNKLTGRIPSVIGNLSCLTSFFFTDNKLKGDIPQEICHLKNITTLMVGVNNLSGIIPSCLYNISSLIKLSVPLNNFHGSLPPNMFHTLPNLQTFEFGGNRFSGTIPTSIINASSTLTYFDISQNYFVRQVPILGRLKDLKYLNLEKNNLGNNSSKDLEFLKYLTNCSKLEVLSIFSNNFGGNLPNSIGNISVELKKLYLGVNQISGKIPTGIGHLVGLIILTMDFNNFEGIIPTTFEKFQKMQVLDLEVNKLSGYIPPFIGNLSQLFELDLHLNMFVGNTPPSIGNSQKLQYLDLSQNMLSGSIPLEIFNLFSLSSSLNLSHNSLSGSLPSEVGMLKNIDMLDVSENNLSGDIPRAIGECVSLEYLLLQGNSFNGTIPSSLASLKGLQYLDISRNQLSGLIPDVMQNISDLQYLNVSFNMLEGEVPTHGVFGNVTQVDVFENNKLCGGISQLHLPPCPIKGRKHSKHHKFRLIAVIVSVISFLLILSFIITIYLMRKRNKKRSFDSPTIDQLATVSYQDLHRGTDGFSTRNLIGSGSFGSVYRGNLLLEDNVVAVKVMNLQKKGAHKSFIVECNALKNIRHRNLVKILTCCSSIDYKGQEFKALVFDYMKNGSLEQWLHPDILNSEHPTTLNLGQRLNIIIDVASVLHYLHEECEQLVLHCDLKPSNVLLDEDMVAHVSDFGIARLISAIGGTSHKNTSTIGIKGTVGYAPPEYGVGSEVSRCGDMYSFGILVLEMLTGRRPTDELFEDGQNLHNFVVNSFPDDLIKILDPHLVPRDAEVAIQDGNSENLIPSVTECLVSLFRIGLICSMESLKERMNIVDVTRELSIIRKTFLAGETN 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01247 1004 Gene3D Ribonuclease Inhibitor 330 623 IPR032675 -
Tsu05g01247 1004 SMART LRR_typ_2 156 180 IPR003591 -
Tsu05g01247 1004 SMART LRR_typ_2 501 525 IPR003591 -
Tsu05g01247 1004 SMART LRR_typ_2 453 476 IPR003591 -
Tsu05g01247 1004 SMART LRR_typ_2 549 572 IPR003591 -
Tsu05g01247 1004 SMART LRR_typ_2 380 403 IPR003591 -
Tsu05g01247 1004 SMART LRR_typ_2 84 108 IPR003591 -
Tsu05g01247 1004 SMART LRR_typ_2 253 277 IPR003591 -
Tsu05g01247 1004 Gene3D Ribonuclease Inhibitor 178 329 IPR032675 -
Tsu05g01247 1004 ProSiteProfiles Protein kinase domain profile. 692 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01247 1004 Gene3D Ribonuclease Inhibitor 17 176 IPR032675 -
Tsu05g01247 1004 SUPERFAMILY L domain-like 19 314 - -
Tsu05g01247 1004 Pfam Leucine rich repeat N-terminal domain 19 57 IPR013210 -
Tsu05g01247 1004 SUPERFAMILY L domain-like 358 612 - -
Tsu05g01247 1004 SUPERFAMILY Protein kinase-like (PK-like) 667 991 IPR011009 -
Tsu05g01247 1004 Pfam Leucine Rich Repeat 134 153 IPR001611 GO:0005515
Tsu05g01247 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672|GO:0006468
Tsu05g01247 1004 Gene3D Phosphorylase Kinase; domain 1 673 773 - -
Tsu05g01247 1004 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524
Tsu05g01247 1004 PRINTS Leucine-rich repeat signature 549 562 - -
Tsu05g01247 1004 PRINTS Leucine-rich repeat signature 455 468 - -
Tsu05g01247 1004 Pfam Leucine rich repeat 537 586 IPR001611 GO:0005515
Tsu05g01247 1004 Pfam Protein kinase domain 694 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01247 1004 SMART serkin_6 692 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01247 1004 PANTHER OS04G0122200 PROTEIN 10 1000 - -
Tsu05g01247 1004 PANTHER LRR RECEPTOR-LIKE KINASE 10 1000 - -
Tsu05g01247 1004 Gene3D Transferase(Phosphotransferase) domain 1 774 1000 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01247 Tsu-Chr5 11261528 11264655 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01247 17 998 Receptor kinase-like Gene Family AT3G47570 45.720 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu05g01247 Pkinase 2.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01247 - - mtr:MTR_5g025930 1303.12