Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01243 ATGAACGGTAGACACCATCGCCACCACCAAAATCACCGGGACAAATCCAAACTCCGCTACATCAAAAAATCTGAACTCGTTGTTTCTTCACCTAACTCTGTTGCAGATGTTGAAAAACGAGTTTCCCCTGAAGAAGATGTTGATGTCAAATGTAACAACAACAACGTTGATGATGTGGCTAGTTCAAGCAAGacgaaggaagaagatgattatgatgatggtATTGATATTATGGATGataggcttgataagttgttaAGTGATATTCAACAACCTGAATTGTCTCATGAACAGATCATAATCAATGATCAATTGCAGCAAGATGAGTTGCTTGTGGTGGAGTCAATTTATGGAGAAAATGTTTTCAACCTTGATTCATGGAAAGGCCTGCGCTGTTTTCAGATACACATAAACATTGATGTTTTGGGTGAAATAGGCATTACTACTAAGGTGAATTCTGTCAATGAAGTTGAAACTATAAGCGGCAATTCAGATGATTTCTTATACTCTTTCAAAGTTCAATACCTTCCACCGATTATTTTGACATGTTTATTACCTATGTCGTATCCGAGTCACCAACCACCTATATTTACAATCTCTGTTAAGTGGTTGGAATCTGCGAAGATTTTGAGTTTATGTTCCATGTTGGATTCAATATGGACAGAACAGCAAGGGCAAGAAGTAATTTACCATTGGGTAGAATGGTTACATAGTTCTTCACTTTCTCATCTGGGATTTGATGAGGAGATTAGACTAGGTCCTTACGGTACGAATCGTGTTGCGGATGCGCGTGTGGTTTCAGGAATTAGATGCATTGATGCTGATATTCCTTTTTTACAAAGCTACAACAATGAGAAACACCATCAGAATTTCCTTAAAGAATTGCATGAATGTTGCATTTGCTATAGTGAATATCCAGGTACCGAGTTCGTCCAGTTACCATGCAAACATTTCTTTTGCCGCAAATGCTTGCAGACCTTTACTCAGATTCACGTAAAAGAAGGAAATGTTAGTAATCTTCAATGTCTTGATGCAAAATGCAAGGACATGATTCCACCTGGCCTTTTAAAACACTTTCTTGGTGACGAAGATTATGAACGTTGGGAATCGATGATGTTAGAGAAAACACTTGCATCAATGTCTGACGTTGTTTATTGCCCAAGATGTGAAACACCTTGTATAGAGGATGAAGACCAACATGCTCAATGCACTCAATGCTTTTTTAGCTTTTGCACCCTTTGCAGAGAACGACGCCATGTTGGCATAGCATGCATGACGCTAGAAATGAAGCTTCAGCTTCTACAGGATCGTCAAAATTCATCTACATTAAAGGGAAATCAACGGCAAATTGAACTTGCAAAGATCAATGAAATGCTCAGTGAGAGAGAAGTTCGCCGCGATTCCAAGTTGTGCCCGTATTGTGACATGGCGATTTCTCGAACTGAAGGTTGTAATAAAATGAAGTGCGGTAATTGTGGAGAGTACTTCTGTTACCGATGTAACAAACCTCTTGATGCATCAGATCCATATGGACATTTCAGGGACGAAGGGTCGTGTGAATTGTTCCCACGAGAAATGGTTGAGAACTGGCAAAGGCAAACACACATAAATCCTCGCCAGGAAATACAACAAATACATGCTGAAGTCTTTCACGCCGGTGGTTCAGCATGTCCTAGTTGTCGTCAATTTAATGTAAAGATGGGAAACAATAACCACATGTTATGTTGGGCATGCCAAAGCCATTACTGCTACTTATGCAACAAGATTGTGATGCGCGGCAGTAAGCATTATGGACCAAAAGGTTGCAAACAGCACAGTGAGGGATAG 1827 0.3897 MNGRHHRHHQNHRDKSKLRYIKKSELVVSSPNSVADVEKRVSPEEDVDVKCNNNNVDDVASSSKTKEEDDYDDGIDIMDDRLDKLLSDIQQPELSHEQIIINDQLQQDELLVVESIYGENVFNLDSWKGLRCFQIHINIDVLGEIGITTKVNSVNEVETISGNSDDFLYSFKVQYLPPIILTCLLPMSYPSHQPPIFTISVKWLESAKILSLCSMLDSIWTEQQGQEVIYHWVEWLHSSSLSHLGFDEEIRLGPYGTNRVADARVVSGIRCIDADIPFLQSYNNEKHHQNFLKELHECCICYSEYPGTEFVQLPCKHFFCRKCLQTFTQIHVKEGNVSNLQCLDAKCKDMIPPGLLKHFLGDEDYERWESMMLEKTLASMSDVVYCPRCETPCIEDEDQHAQCTQCFFSFCTLCRERRHVGIACMTLEMKLQLLQDRQNSSTLKGNQRQIELAKINEMLSEREVRRDSKLCPYCDMAISRTEGCNKMKCGNCGEYFCYRCNKPLDASDPYGHFRDEGSCELFPREMVENWQRQTHINPRQEIQQIHAEVFHAGGSACPSCRQFNVKMGNNNHMLCWACQSHYCYLCNKIVMRGSKHYGPKGCKQHSEG 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01243 608 Gene3D - 443 551 - -
Tsu05g01243 608 Pfam RWD domain 104 238 IPR006575 GO:0005515
Tsu05g01243 608 ProSiteProfiles TRIAD supradomain profile. 294 525 IPR044066 -
Tsu05g01243 608 SMART ibrneu5 453 519 IPR002867 -
Tsu05g01243 608 SMART ibrneu5 366 424 IPR002867 -
Tsu05g01243 608 ProSitePatterns Zinc finger RING-type signature. 315 324 IPR017907 -
Tsu05g01243 608 SUPERFAMILY RING/U-box 544 605 - -
Tsu05g01243 608 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 84 540 - -
Tsu05g01243 608 MobiDBLite consensus disorder prediction 31 70 - -
Tsu05g01243 608 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 84 540 IPR031127 GO:0004842|GO:0016567
Tsu05g01243 608 SUPERFAMILY RING/U-box 366 429 - -
Tsu05g01243 608 Gene3D Ubiquitin Conjugating Enzyme 96 244 IPR016135 -
Tsu05g01243 608 ProSiteProfiles RWD domain profile. 108 243 IPR006575 GO:0005515
Tsu05g01243 608 SMART RWD2001b 108 243 IPR006575 GO:0005515
Tsu05g01243 608 SMART ring_2 386 474 IPR001841 -
Tsu05g01243 608 SMART ring_2 298 345 IPR001841 -
Tsu05g01243 608 SMART ring_2 557 586 IPR001841 -
Tsu05g01243 608 SUPERFAMILY UBC-like 103 238 IPR016135 -
Tsu05g01243 608 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 382 IPR013083 -
Tsu05g01243 608 SUPERFAMILY RING/U-box 293 377 - -
Tsu05g01243 608 SUPERFAMILY RING/U-box 459 513 - -
Tsu05g01243 608 MobiDBLite consensus disorder prediction 38 52 - -
Tsu05g01243 608 Pfam IBR domain, a half RING-finger domain 366 424 IPR002867 -
Tsu05g01243 608 Pfam IBR domain, a half RING-finger domain 456 504 IPR002867 -
Tsu05g01243 608 ProSiteProfiles Zinc finger RING-type profile. 298 342 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01243 297 544 ARIADNE family AT2G31780 21.569 1.17e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01243 K11971 - gmx:100500662 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01243 05 11176308 11182123 Tsu05g01243 05 11176308 11182123 ECH