Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01241 ATGGATGGAACCAGCAGCGTCACTGGCGGCGGAGACGGTTCAGCTCAGTTACCGGCACCGACACCGATGCAAAACTCAAACGCGCCGCCACCGTTTTTGAGCAAAACCTATGATATGGTGGATGATTCTTCTACGGATGCGATAGTTTCTTGGAGCGCAACGAACAACAGTTTCGTTGTTTGGGACCCACCGGAATTCGCTAGGGACCTTTTGCCGAAGTATTTCAAGCATAATAACTTCTCAAGCTTCGTTAGACAGTTGAATACTTATGGTTTCAGGAAGGTCGACCCAGATCGCTGGGAATTTGCAAATGAGGGCTTTTTGAGGGGTCAAAAGCACTTACTTAAGAGTATAACTCGACGAAAGCCTGCTCATGGTCCTAATAATCAACAGGCTCAGCAACCTCATGGACAGAGTTCATCAGTAGGGGCATGTGTAGAAGTCGGGAAATTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGACAAGAATGTTCTGATGCAAGAGCTTGTGAGGTTGAGACAGCAGCAACAAACCACTGATGGCCAGCTACAAACAATGGCTCAGCGCCTTCAGGGAATGGAGCAACGACAACAGCAAATGATGTCATTCCTTGCCAAAGCTGTCCAGAGCCCTGGATTCTTTGCTCAGTTTGTGCAACAGCAAAATGACAGCAATAGGCGAATAACTGAAGCCAATAAAAAGCGGCGGCTCAAGCAGGATGGTATTGCCGAAACAACAGAGCGAGCTGCCCCTTCTGATGGACAAATTGTTAAGTATCAACCTCTGATGAATGAAACAGCAAAAGCAATGCTAAGGAAGATCATGAAATGGGATACTCCTCGTGTAGAATCTTTTAGTAAAAACCCTGATAATTACTTGATTGGAGATGGTACATCACCGTCAAGTGCAATGGACAGTAGTAGCTCATCGAGCTGGAATTCCGGAGTAACTCTTCAAGAGGTTCCTCCATCTTCAGTGCAGTCTTCTCAATTTCCAGCTGCAACGGGGACTCAAGGACACATACCCTCGGCAGAAAATCCTGAAATTCTATCTGTACCTCAAGCTGCAGCAGCATCGGAAAATGTTATGAAAGATGGAGCACGTGCAGCACCAACTATTCCGACTTCTCAAGCTGATGTTGTCATGCCTGATATACATTCAATACCAGAGATTGTGCCAAGAAGTATTCTTGATATTCCTGAAGACAATTATATGGCTCCCGGGACAGATGATGGATTTATGGATCCGACTTCACTCGGGTCTTTTCCCCTTGATTTTGAAGATCTTTCACCCGGCGCAGACATTGATGATTTGTTAAACAATCCTATTTGGGATGATTTTTTGCAATCTTCAGTTCCGGAGGATCTTGAGACCAATGTTGATGAAATATCCAGAGGGAATGAGGTGCAGCCAACAGAAAATGGATGGGACAATAACAATACTCAACACCTGGATCAACTAACAGAACAGATGGGTCTTCTTTCTTCTGATGTCAAAAGAATTTAA 1512 0.4497 MDGTSSVTGGGDGSAQLPAPTPMQNSNAPPPFLSKTYDMVDDSSTDAIVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPAHGPNNQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDGQLQTMAQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNDSNRRITEANKKRRLKQDGIAETTERAAPSDGQIVKYQPLMNETAKAMLRKIMKWDTPRVESFSKNPDNYLIGDGTSPSSAMDSSSSSSWNSGVTLQEVPPSSVQSSQFPAATGTQGHIPSAENPEILSVPQAAAASENVMKDGARAAPTIPTSQADVVMPDIHSIPEIVPRSILDIPEDNYMAPGTDDGFMDPTSLGSFPLDFEDLSPGADIDDLLNNPIWDDFLQSSVPEDLETNVDEISRGNEVQPTENGWDNNNTQHLDQLTEQMGLLSSDVKRI 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01241 503 MobiDBLite consensus disorder prediction 123 141 - -
Tsu05g01241 503 MobiDBLite consensus disorder prediction 293 346 - -
Tsu05g01241 503 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 487 IPR027725 -
Tsu05g01241 503 Coils Coil 150 177 - -
Tsu05g01241 503 SUPERFAMILY "Winged helix" DNA-binding domain 28 121 IPR036390 -
Tsu05g01241 503 Gene3D - 24 122 IPR036388 -
Tsu05g01241 503 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 10 487 - -
Tsu05g01241 503 SMART hsfneu3 28 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g01241 503 MobiDBLite consensus disorder prediction 121 141 - -
Tsu05g01241 503 MobiDBLite consensus disorder prediction 287 347 - -
Tsu05g01241 503 ProSitePatterns HSF-type DNA-binding domain signature. 71 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g01241 503 MobiDBLite consensus disorder prediction 1 31 - -
Tsu05g01241 503 MobiDBLite consensus disorder prediction 232 251 - -
Tsu05g01241 503 PRINTS Heat shock factor (HSF) domain signature 32 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g01241 503 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g01241 503 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu05g01241 503 Pfam HSF-type DNA-binding 32 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01241 Tsu-Chr5 11157297 11161719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01241 9 497 HSF AT1G32330 54.207 1.23e-168 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tsu05g01241 HSF_DNA-bind 4.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01241 K09419 - gmx:100794897 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01241 05 11157297 11161719 Tsu05g01241 05 11157297 11161719 ECH