Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu05g01240 | ATGGCTATGCACCACCACAGTGAGAAAGACAATGGAGAACAGCTTAGTTATATCCCACATGATGCACTACAAAATTTGGAATGGTACCCCACTTTTTCAGAAATTATGGAGAAAAGTTTGCAAGAGGATTTGAATTATTGGCTCTTTTGTGACACTCCTGAGAAAGAAACTCTCAAGTTCAATCAATCGGGTGAAGGAATAACACAAGAGAATGTGTCAaatgttcaaataaatcaagaGAGAAATAATGATACAAGTTTGGCTAATATTCATATCATGAATCATGAGAATCTACCAAAGAATAATGTGAAGTCTTGTTCTACTAAGAAGAGTAGAGATAAGAGTCTCAAAGCAAAGAGCaaagataaatataaagatAGAATTTGTAGCCATTGTAAGACTAAAGACACTACTCAATGGAGGGCTGGTCCTTTAGGGAAAAATACTTTATGCAATCCTTGTGGATTAAGATACAAGTCAAATCGATTGATGGAAGGGTATAAACCTAAGGCAACTTCAAATCTTGATATGATAAAAGGATTCAGATTTTCAATCTTGTGA | 561 | 0.3351 | MAMHHHSEKDNGEQLSYIPHDALQNLEWYPTFSEIMEKSLQEDLNYWLFCDTPEKETLKFNQSGEGITQENVSNVQINQERNNDTSLANIHIMNHENLPKNNVKSCSTKKSRDKSLKAKSKDKYKDRICSHCKTKDTTQWRAGPLGKNTLCNPCGLRYKSNRLMEGYKPKATSNLDMIKGFRFSIL | 186 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu05g01240 | 186 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 122 | 167 | - | - | |
Tsu05g01240 | 186 | MobiDBLite | consensus disorder prediction | 99 | 119 | - | - | |
Tsu05g01240 | 186 | SMART | GATA_3 | 123 | 173 | IPR000679 | GO:0006355|GO:0043565 | |
Tsu05g01240 | 186 | PANTHER | GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 7 | 179 | - | - | |
Tsu05g01240 | 186 | ProSiteProfiles | GATA-type zinc finger domain profile. | 123 | 161 | IPR000679 | GO:0006355|GO:0043565 | |
Tsu05g01240 | 186 | Coils | Coil | 186 | 186 | - | - | |
Tsu05g01240 | 186 | Gene3D | - | 118 | 176 | IPR013088 | GO:0006355|GO:0008270 | |
Tsu05g01240 | 186 | PANTHER | GATA TRANSCRIPTION FACTOR | 7 | 179 | - | - | |
Tsu05g01240 | 186 | CDD | ZnF_GATA | 128 | 182 | IPR000679 | GO:0006355|GO:0043565 | |
Tsu05g01240 | 186 | Pfam | GATA zinc finger | 129 | 164 | IPR000679 | GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu05g01240 | Tsu-Chr5 | 11154870 | 11155430 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu05g01240 | 112 | 179 | C2C2-Gata Transcription Factor Family | AT5G25830 | 44.118 | 5.84e-16 | 72.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-GATA | Tsu05g01240 | GATA | 1.7e-14 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu05g01240 | - | - | mtr:MTR_7g446110 | 182.185 |