Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01240 ATGGCTATGCACCACCACAGTGAGAAAGACAATGGAGAACAGCTTAGTTATATCCCACATGATGCACTACAAAATTTGGAATGGTACCCCACTTTTTCAGAAATTATGGAGAAAAGTTTGCAAGAGGATTTGAATTATTGGCTCTTTTGTGACACTCCTGAGAAAGAAACTCTCAAGTTCAATCAATCGGGTGAAGGAATAACACAAGAGAATGTGTCAaatgttcaaataaatcaagaGAGAAATAATGATACAAGTTTGGCTAATATTCATATCATGAATCATGAGAATCTACCAAAGAATAATGTGAAGTCTTGTTCTACTAAGAAGAGTAGAGATAAGAGTCTCAAAGCAAAGAGCaaagataaatataaagatAGAATTTGTAGCCATTGTAAGACTAAAGACACTACTCAATGGAGGGCTGGTCCTTTAGGGAAAAATACTTTATGCAATCCTTGTGGATTAAGATACAAGTCAAATCGATTGATGGAAGGGTATAAACCTAAGGCAACTTCAAATCTTGATATGATAAAAGGATTCAGATTTTCAATCTTGTGA 561 0.3351 MAMHHHSEKDNGEQLSYIPHDALQNLEWYPTFSEIMEKSLQEDLNYWLFCDTPEKETLKFNQSGEGITQENVSNVQINQERNNDTSLANIHIMNHENLPKNNVKSCSTKKSRDKSLKAKSKDKYKDRICSHCKTKDTTQWRAGPLGKNTLCNPCGLRYKSNRLMEGYKPKATSNLDMIKGFRFSIL 186
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01240 186 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 122 167 - -
Tsu05g01240 186 MobiDBLite consensus disorder prediction 99 119 - -
Tsu05g01240 186 SMART GATA_3 123 173 IPR000679 GO:0006355|GO:0043565
Tsu05g01240 186 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 7 179 - -
Tsu05g01240 186 ProSiteProfiles GATA-type zinc finger domain profile. 123 161 IPR000679 GO:0006355|GO:0043565
Tsu05g01240 186 Coils Coil 186 186 - -
Tsu05g01240 186 Gene3D - 118 176 IPR013088 GO:0006355|GO:0008270
Tsu05g01240 186 PANTHER GATA TRANSCRIPTION FACTOR 7 179 - -
Tsu05g01240 186 CDD ZnF_GATA 128 182 IPR000679 GO:0006355|GO:0043565
Tsu05g01240 186 Pfam GATA zinc finger 129 164 IPR000679 GO:0006355|GO:0043565
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu05g01240 Tsu-Chr5 11154870 11155430 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01240 112 179 C2C2-Gata Transcription Factor Family AT5G25830 44.118 5.84e-16 72.8
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu05g01240 GATA 1.7e-14 CL0167
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01240 - - mtr:MTR_7g446110 182.185