Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01239 ATGATTATGACATTGGTTATTAGAGAAAGAAGACACAGGCAAGCTCTAAGGCTTTCCTTACCAAAACCTCAAATTACATCTTCTTCTCATAATTTCCTTAACCAAACACAAAGGCCATCATTGATTACATCACCATCCTCTCATGGAATTAGAAGCCTCTTAGACCTTGAAAAAGTAGCAGTACTTGGCCATGGAAATGGTGGAATAGTCTATAAAGTTCATCACAAGAAAAACAATTCTTTTTATGCATTGAAAGTTTTAAACTTTGATCGAAATGGTATTGGATTTCGACAACCACCAACATTAGAAGCTGAGATTCTCAAAAGGGTCGTTGATTCACCTTATATTGTAAGGTGTCATGCAGTTTTTTACGATCATGCAAATGTAACACCGACACTTCAGACTAAAGGTGTATCTGGTGACCTTAGTTTTGTTATGGAATATATGGAAGGAGGGTCATTGCATGATATCTTGCAACAACATCGTAGGCTTCCTGAGGAAGTGATTTGTGTTTTGGCTAAGAGTGTTTTGGAAGGGCTAAACTATTTGCATGGTATGAACATTGTTCATAGAGATATTAAACCTTCAAATttgcttgtgaatgaaaaagggGAGGTGAAAATAGCAGATTTTGGTGTTAGTCATGTAGTGGAAGGTAGATTTGAAGCAAATGATATGAACGCAGGTACATGTGCATATATGAGTCCAGAAAGATTTGATCTTGAAAGATGGGGTGGTGAAAATGTTGATGAATTTGTTGGTGATGTTTGGTCATTAGGTGTTGTAATGTTGGAATGTCTTTTAGGTCATTTTCCTTTGATTGGTCCTCAACAGAGACCTGACTGGGCTACTTTGATGTGTGCAATTTGTTTTGGTGAGAGGCTTGAGATGCCAGAGAAAGCTTCAGAAGAGTTTCAAAGTTTTGTTAGAAGGTGTCTTGAGAAGGATTGGAGGAAGAGAGGTACTGTTTTGGAGCTTCTGAAACACCCTTTTGTGAAAAGAAACTCTTGCTGTTCTAACAAAGTGATGAGGGATTATGTCCTTTGTAGGTGA 1053 0.3694 MIMTLVIRERRHRQALRLSLPKPQITSSSHNFLNQTQRPSLITSPSSHGIRSLLDLEKVAVLGHGNGGIVYKVHHKKNNSFYALKVLNFDRNGIGFRQPPTLEAEILKRVVDSPYIVRCHAVFYDHANVTPTLQTKGVSGDLSFVMEYMEGGSLHDILQQHRRLPEEVICVLAKSVLEGLNYLHGMNIVHRDIKPSNLLVNEKGEVKIADFGVSHVVEGRFEANDMNAGTCAYMSPERFDLERWGGENVDEFVGDVWSLGVVMLECLLGHFPLIGPQQRPDWATLMCAICFGERLEMPEKASEEFQSFVRRCLEKDWRKRGTVLELLKHPFVKRNSCCSNKVMRDYVLCR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01239 350 Gene3D Transferase(Phosphotransferase) domain 1 52 347 - -
Tsu05g01239 350 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 7 335 IPR045269 GO:0004674|GO:0006914
Tsu05g01239 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Tsu05g01239 350 ProSiteProfiles Protein kinase domain profile. 56 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01239 350 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-LIKE 7 335 - -
Tsu05g01239 350 SUPERFAMILY Protein kinase-like (PK-like) 57 335 IPR011009 -
Tsu05g01239 350 CDD PKc_MAPKK_plant_like 55 333 - -
Tsu05g01239 350 ProSitePatterns Protein kinases ATP-binding region signature. 62 85 IPR017441 GO:0005524
Tsu05g01239 350 Pfam Protein kinase domain 57 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01239 350 SMART serkin_6 56 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01239 Tsu-Chr5 11145065 11146117 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01239 3 333 MAP Kinase Kinase Gene Family AT1G32320 51.360 5.00e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Tsu05g01239 Pkinase 1.2e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01239 K20604 - gmx:100817973 499.975