Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01237 ATGAGTTTTCAGGACATACAATCCGGCCGCCGAAACCTAATCAACGGCAAACAAGACCCGACGCAAGCGGTGGCTTCCGGCGTATTCCAGATCAACACCGCCGTCTCCACTTTTCAGAGACTCGTTAACACTCTCGGTACCCCTAAAGACACGCCAGAGCTTCGCGAGAAACTGCACAAGACGAGACTTCATATTGGACAATTGGTGAAGGATACTTCTGATAAACTTAAGCAAGCTAGTGAAATTGATCATCATGCTGATATTAATGCAACCAAGAAGATAGCAGATGCTAAATTGGCGAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCGTCTTGCAGCTGAGAGGGAGACAGCTTACACTCCTTTTGTTCCACAAGCAGTTCAGCCATCCAGCTATACAGTCAACGAGGCAGGTGTTGGTTCCGATAAAAGTCAAGAACAGCAGGCCCTTCTTGTGGAATCCAGAAGACAGGAGGTAATATCCTTAGATAATGAGATTTCTTTCAATGAGGCTATCATTGAGGAAAGAGAACAAGGCATTCAAGAAATCCAGCAGCAGATAGGTGAAGTAAATGAGATCTTCAAAGATCTTGCTGTGCTTGTTCATGAGCAAGGAGCAATGATTGATGATATTGGGACCAACATTGAGAATTCTCATGAAGCTACTGTCCAAGCAAAATCGCAACTTGTTCAAGCTGCAAAGACACAAAGATCAAATTCATCTTTGGCGTGCTTGCTTCTGGTGATATTTGGAATTGTgcttctcatcatcatcattattgtTGCTAGTCCATTATGA 813 0.4244 MSFQDIQSGRRNLINGKQDPTQAVASGVFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSDKLKQASEIDHHADINATKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVQPSSYTVNEAGVGSDKSQEQQALLVESRRQEVISLDNEISFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGTNIENSHEATVQAKSQLVQAAKTQRSNSSLACLLLVIFGIVLLIIIIIVASPL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01237 270 Pfam SNARE domain 212 263 IPR000727 -
Tsu05g01237 270 PANTHER SYNTAXIN OF PLANTS PROTEIN 8 267 - -
Tsu05g01237 270 PANTHER SYNTAXIN 8 267 IPR045242 -
Tsu05g01237 270 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Tsu05g01237 270 Gene3D - 15 128 - -
Tsu05g01237 270 SUPERFAMILY t-snare proteins 17 230 IPR010989 GO:0016020|GO:0016192
Tsu05g01237 270 SMART tSNARE_6 170 237 IPR000727 -
Tsu05g01237 270 Gene3D - 169 269 - -
Tsu05g01237 270 ProSitePatterns Syntaxin / epimorphin family signature. 181 220 IPR006012 GO:0005484|GO:0006886|GO:0016020
Tsu05g01237 270 SMART SynN_4 8 122 IPR006011 GO:0016020
Tsu05g01237 270 CDD SynN 18 135 IPR006011 GO:0016020
Tsu05g01237 270 CDD SNARE_Qa 178 236 - -
Tsu05g01237 270 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 175 237 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01237 Tsu-Chr5 11135381 11138861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01237 1 256 SNARE and Associated Proteins AT5G46860 76.923 9.44e-143 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01237 - K08488 gsj:114391232 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01237 05 11135381 11138861 Tsu05g01237 05 11135381 11138861 ECH
Tsu05g01237 05 11135381 11138861 Tsu04g02918 04 35463154 35467985 PCT