Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01234 ATGGCAGAAGAAAGAGTTGAGTATGTTGTTAGACTTGATTCAAGTAATTCAAGTTATAAACAAAGACAACAAATTGTGAAGCCACAAACCATGGCAGATTGCTTCAAGTTTAAGGTCACTGCTGTCCATCGAGATTTTACTACAATTCATGGAACTTCGATCCCAACATGTTTGTTTAGAACCTCAATAGTTATAAATTGCAATGAATTCTTCACACAAAACCAAGATTTTCTTTGGTCAAAGTTACAAGGATTCTACTTATCTCCATATTTCAATTATGAAGACCTTGCCCTAGTATCAAGGAGTCTTATACCTAGGGTTAAAGAGATGTTTGGTTTCTCCGATTCTTTTCGTCTTACTATTCCAACCACCGGTGTTCGTACGGTAGACATccctttgattttaaatattatatcaaAAGTGCAACACAATGGAGAAAGAATAATTCAAGAAGTGGTGGAAGAGCCTAGCCGATCGCAATCGGAAAGCATGATTCCGGCATCTAATGAAGTTGTTTCATCTCTTAAAGCTTACTCACTTCATAGGAATTGTAGCATATGCATGGAAAGATTTCATAATGATTTAGAAGAAGATGGTGCTAGTGATGAAGTGAAGGTATCAACAATGGCATGTGGTCATATATTTCATTATGATTGTATTGTAAAGTGGCTACGTACAAGTCATGTATGCCCCCTATGTCGTTATGCTATGCCCGTTTGA 720 0.3597 MAEERVEYVVRLDSSNSSYKQRQQIVKPQTMADCFKFKVTAVHRDFTTIHGTSIPTCLFRTSIVINCNEFFTQNQDFLWSKLQGFYLSPYFNYEDLALVSRSLIPRVKEMFGFSDSFRLTIPTTGVRTVDIPLILNIISKVQHNGERIIQEVVEEPSRSQSESMIPASNEVVSSLKAYSLHRNCSICMERFHNDLEEDGASDEVKVSTMACGHIFHYDCIVKWLRTSHVCPLCRYAMPV 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01234 239 ProSiteProfiles Zinc finger RING-type profile. 184 234 IPR001841 -
Tsu05g01234 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 75 238 - -
Tsu05g01234 239 SMART ring_2 184 233 IPR001841 -
Tsu05g01234 239 Pfam RING-H2 zinc finger domain 183 234 IPR024766 GO:0008270
Tsu05g01234 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 239 IPR013083 -
Tsu05g01234 239 SUPERFAMILY RING/U-box 183 237 - -
Tsu05g01234 239 PANTHER F6A14.12 PROTEIN-RELATED 75 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01234 Tsu-Chr5 11117238 11117957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01234 153 238 C3H Transcription Factor Family AT1G18760 37.113 2.34e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01234 - - aprc:113859940 140.969