Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01227 atggagCTATTTCCAGCACAACCAGATTTATCTTTGCAAATTAGTCCTCCAAacacaaaaccaacaacaaattCAAATTGGAAAAGAACATCAACAGAAGAAGAAATGGATTTGGGGTTTTGGAAAAGAGCTTTGGATTCAAGAAACtctttatcatcatcatctagaAATGATAACTCTTTTGACCTTTCTCTTTCAAATCCAACAAGGTCTTTAGATTCACACAATAACACTTCTTCAAATAATCTCATTCATAATCACTTCCAAAATAgtgttagtaataataataatgcaaacaacccttttcaacaaaatcattacTTTCAACACCCCCAACAACTCTTTCAACACCACCAACCACAACATCAAAGCTTAAGTCAAGAACTTGGTTTTCTTAGACCTATTAGAGGAATTCCTGTTTATCAAAACCCTCCTCCTTTGTCATTTCCTCAacttcataatcataatcataatcttAATCATCATCTTAATCATGTTTTAGATGGTTCTACTACTACTAATACTACACCTTCTTCTATTTCTAACACAAACACAAGTTCAAGCCCTTTTCAATCTCAAGCTTTGATGAGGTCAAGATTCTTGTCAAGATTTCCTGCAAAAAGAAGCATGAGAGCTCCAAGGATGCGTTGGACAACGACACTTCATGCTCGATTTGTTCATGCTGTTGAGCTCTTAGGTGGCCATGAAAGGGCTACTCCAAAATCAGTTCTTGAGCTCATGGATGTTAAGGATCTTACATTAGCACATGTTAAGTCTCATTTACAGATGTATCGAACGGTGAAAACTACGGATAGAGTTGGAGCTTCGTCAGGGCAATCAGATGTATATGATAATGGATCATCTGGAGATAATTCTGATGATATAATGTTTGACATCAACTCTTCAAGAAGATCATCTGATTTATCCATTAATAAGCAAGGAAGATCAAGTGTTAATCAAGATAAAGAATGTTATGGTCTATGGAGCAACTCTTCTAGGGAAGCTTGGTTACATGGTAAACCAAAGATTGATTCTATTGGAAACATGCAATCTCTTGAGaaGGAAATGGATCCAAAGTGTCTAAGCTATGAGAGAATATCAGATGGAAGTTCATCAACAAACCTATCAGGATCAAGCCCCAAGAAACCTAATTTGGATTTGGAATTCACCTTAGGACAACCTTCTCTTTGA 1191 0.3308 MELFPAQPDLSLQISPPNTKPTTNSNWKRTSTEEEMDLGFWKRALDSRNSLSSSSRNDNSFDLSLSNPTRSLDSHNNTSSNNLIHNHFQNSVSNNNNANNPFQQNHYFQHPQQLFQHHQPQHQSLSQELGFLRPIRGIPVYQNPPPLSFPQLHNHNHNLNHHLNHVLDGSTTTNTTPSSISNTNTSSSPFQSQALMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRVGASSGQSDVYDNGSSGDNSDDIMFDINSSRRSSDLSINKQGRSSVNQDKECYGLWSNSSREAWLHGKPKIDSIGNMQSLEKEMDPKCLSYERISDGSSSTNLSGSSPKKPNLDLEFTLGQPSL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01227 396 MobiDBLite consensus disorder prediction 11 29 - -
Tsu05g01227 396 MobiDBLite consensus disorder prediction 365 383 - -
Tsu05g01227 396 MobiDBLite consensus disorder prediction 271 298 - -
Tsu05g01227 396 MobiDBLite consensus disorder prediction 1 33 - -
Tsu05g01227 396 MobiDBLite consensus disorder prediction 71 104 - -
Tsu05g01227 396 Pfam Myb-like DNA-binding domain 214 265 IPR001005 -
Tsu05g01227 396 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 395 - -
Tsu05g01227 396 MobiDBLite consensus disorder prediction 363 396 - -
Tsu05g01227 396 SUPERFAMILY Homeodomain-like 210 266 IPR009057 -
Tsu05g01227 396 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Tsu05g01227 396 MobiDBLite consensus disorder prediction 169 192 - -
Tsu05g01227 396 Gene3D - 212 269 - -
Tsu05g01227 396 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 395 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01227 Tsu-Chr5 11004733 11011326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01227 1 396 G2-like Transcription Factor Family AT4G17695 38.835 2.62e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu05g01227 Myb_DNA-binding 1.9e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01227 - - aprc:113868756 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01227 05 11004733 11011326 Tsu05g01227 05 11004733 11011326 ECH
Tsu05g01227 05 11004733 11011326 Tsu04g02915 04 35436217 35443499 PCT