Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01225 ATGGTGGAAGGAGGAAGAGTACGATTGTCTGATGAAGCTAGAAATGGGTTAGAAGTGTTGAAGCGGAAAAGGCTTCAGCGTGCACAAGCCAACACTGCCACGCAGGCGAGTGTTGCTAACATGACGAATAGAAGCGGAGGGGATGCTTTGAGAGCTTCAGCTCCATGTGGTCCAAGATTGCATGGTAATCCGGATGTCTTTTTCAAGCGGAAGGTGGCTAAGTTTGATACAAGTGATTTGGAATGGACTGATAAAGTTCCAGAGTGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAAGATCCTTTGGTTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCGCCTTTGAGTGCTTCTGTACCTGCTGGGGTTGTTTTAATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGAGTGCAGCCTCTCCGCCTTGCTGAATGGGATACTGAAGACAAAGTCACATTTTTTATGAGTGGAAGAAATTATACATTCCGTGATTATGAGAAAATGGCAAACAAGGTTTTTGCACGAAGATATTGCAGCGCTGGATGTCTTCCTGCCACTTACTTGGAAAAGGAGTTTTGGCATGAAATTGGTTGTGGGAAAATGGACACCGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCTACTGATCAGCTTGGGAACAGCAAATGGAATTTGAAGAAGCTTTCCCGGTTGCCGAAATCAACTTTGCGTCTCTTGGAAACATCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGCATGTTTGCATGGCACGTGGAGGATCATTACTTGTACAGCATTAATTATCAGCACTGTGGGGCGTCAAAAACATGGTATGGTATCCCTGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGGGAACATGTATATTCTACTGATATTTTGTCAAGTGATGGGGAAGATGGAGCCTTTGATGTTCTCTTGGGGAAAACAACTATGTTTCCACCTAATATTTTGCTCGAACATAAAGTCCCAGTCTACAAGGCTGTACAAAAGCCAGGGGAGTTTGTAATAACCTTCCCTAGAGCGTATCATGCAGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCACTTGGTGATTGGTTTCCTCTTGGGGCAATTGCGAGCAGGCGATATGCACTTCTTAACAGGGTTCCTTTACTTCCCCACGAAGAACTTCTTTGCAAAGAAGCGATGCTTATTCATACATCCTTGGAACTTGAAGATTCAGACTTTCCCTCTTCAGACTTGCTTTCTCATAATAGGACAAAGATATCTTTCATTAATTTGTTGCGTTTCCAACATTGTGCGAGTTGGTTACTAATGAAATCAAGGGCATGTATAAATGTTTCTTCTCATTCAAATGGCACAATTCTCTGTAGCCTGTGCAAACGTGACTGTTATGTAGCTTATGTTGATTGCAGCTGTCACATGCATCCTGTATGCCTACGCCATGATGTTAAATCTCTTGACTTCACCTGTGGGAGAAAATACACTCTTTATTTGAGAGAGGATATTGCGGATATGGAAGCTGCAGCCAAGGTGTTTGAGCAAGAAGATGGGATATTGGATGAGATAAGCAAGCAATCCAAAAGTGACCAAGATATGTACTCATATCCTTTGTCCAATATGTTTCAGAGAGCTGAAGCAAATGGATACGAGCCTTATTGTGAGCTTAAACTTGATTCTATGATTGAATTTTATACCACTCCGGAACAGTCAACAAATAATCATGAGTGTGGCACACAAAGTCAATTTGTTTTGGGACATTGCTCAGAAGTTCATACATCGGAAGCGTCTGAGATTTCCTTTTCGGCTGCATCCACTCTTTGTTCTCTTTCAGAACCTCTTGAATGTTCCTCTGCTCCTGAAAATGCTGAGGAGCAGGCTAACTTGAAAATGGGCATCATTGATTTTGAAGAACTTGGCGAAACAATATCCAACAGTGCATGCAAATCTTCGCTATCCCCTGCACTGTATCATGAAAGCTCGGCTAAACTGCATGATCTTCAGAAACCGGACATGAAACCCATAGTGGACAACGACAGTGATGATTCTGATTCAGGGATATTTAGAGTAAAGCGACCTTCCTCTCTGAAAGCAGAGAAAAGAAATGCGAAGGTTGCTGCTTTGAAGCATTCTGAGCAGCAGGGACTTAAGCGATTGAAAAAAGTCCTTCCTGAAGGAAAAAGCAGGCAACAAATGAATTTCAGAACCAGTGAATCAAGTTACAAACAAAATCCTGTTATTCATAAAGTTGATATCGAAATTTCATCGAAGGACAGATTTGCAAGGGGAAATGGTGCTCCCATTTCTGTAAGATATAAAAAGTCAAGCAATGAAGACGTAAGCATCCATATGCAACAAGATCACCACCGGAGAGAGAGGTTTCAGCAAACTTATAGGGAAGCACCTTCCATTGAGACTGGGCCAAAGCGACTTAAAGTCCGAGGCCCTTCATTTTTAGGCTTAGAGAGCAGGTTGAATTGA 2568 0.4202 MVEGGRVRLSDEARNGLEVLKRKRLQRAQANTATQASVANMTNRSGGDALRASAPCGPRLHGNPDVFFKRKVAKFDTSDLEWTDKVPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDYEKMANKVFARRYCSAGCLPATYLEKEFWHEIGCGKMDTVEYACDVDGSAFSSSPTDQLGNSKWNLKKLSRLPKSTLRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGIPGHAALEFERVVREHVYSTDILSSDGEDGAFDVLLGKTTMFPPNILLEHKVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFALGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLIHTSLELEDSDFPSSDLLSHNRTKISFINLLRFQHCASWLLMKSRACINVSSHSNGTILCSLCKRDCYVAYVDCSCHMHPVCLRHDVKSLDFTCGRKYTLYLREDIADMEAAAKVFEQEDGILDEISKQSKSDQDMYSYPLSNMFQRAEANGYEPYCELKLDSMIEFYTTPEQSTNNHECGTQSQFVLGHCSEVHTSEASEISFSAASTLCSLSEPLECSSAPENAEEQANLKMGIIDFEELGETISNSACKSSLSPALYHESSAKLHDLQKPDMKPIVDNDSDDSDSGIFRVKRPSSLKAEKRNAKVAALKHSEQQGLKRLKKVLPEGKSRQQMNFRTSESSYKQNPVIHKVDIEISSKDRFARGNGAPISVRYKKSSNEDVSIHMQQDHHRRERFQQTYREAPSIETGPKRLKVRGPSFLGLESRLN 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01225 855 Gene3D Cupin 89 447 - -
Tsu05g01225 855 PANTHER LYSINE-SPECIFIC DEMETHYLASE 53 851 - -
Tsu05g01225 855 ProSiteProfiles JmjC domain profile. 236 406 IPR003347 -
Tsu05g01225 855 SUPERFAMILY Clavaminate synthase-like 167 422 - -
Tsu05g01225 855 SMART JmjN_1 88 129 IPR003349 -
Tsu05g01225 855 ProSiteProfiles JmjN domain profile. 89 130 IPR003349 -
Tsu05g01225 855 Pfam C5HC2 zinc finger 486 537 IPR004198 -
Tsu05g01225 855 MobiDBLite consensus disorder prediction 827 855 - -
Tsu05g01225 855 SMART cupin_9 233 406 IPR003347 -
Tsu05g01225 855 Pfam JmjC domain, hydroxylase 266 389 IPR003347 -
Tsu05g01225 855 Pfam jmjN domain 90 122 IPR003349 -
Tsu05g01225 855 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 53 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01225 Tsu-Chr5 10956456 10963624 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01225 72 545 JUMONJI Transcription Factor Family AT2G34880 32.065 3.00e-63 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu05g01225 JmjC 7.9e-40 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01225 - - gmx:100798611 1383.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01225 05 10956456 10963624 Tsu05g01225 05 10956456 10963624 ECH