Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01224 ATGTATGGTGATTGTCAAGTTATGTCAACAATGGGAGGAGGAAATGTAGTAGTAAACTCagattctcttttttcttctccgATCCATAACCCTAACTTCAACTTCATGTCAACCATGCCTTTTCaacctttttcttcttccatgaaagaagaagatggaaTGTTGAGAGGGAAAGAAGAGATAATGGATCAAAGTGGCTCCGGTAGCGAACAAGTTGAAGATAAGTCAGGGAATGAACAAGAGATTAATAATGAACAAGAAACTACGAAGAAGAAACGTTATCATCGTCACACTGCTCGCCAGATCCAAGAAATGGAAGCATTATTTAAGGAATGTCCACACCCAGATGATAAACAAAGACTGAAACTAAGTCATGATTTGGGATTAAAACCACGACAGGTTAAATTCTGGTTTCAGAATCGTCGAACTCAGATGAAGGCACAACAAGATCGTTCGGATAATGTGATACTTAGAGCGGAGAATGAGAATTTAAAGAATGAGAACTATCGGCTACAAGCGGCGTTGCGTAATATTATGTGTCCTAATTGTGGTGGACAATGCATAATGGGCCCTGATTTGGGCTTGGATGATCATCAACTTCGACTTGAAAATGCCCGGTTAAGAGATGagCTAGAACGTGTATGTTGTATGACATCAAGATACACTGGTCgccaaatccaaacaatggcaCCACCTTCATCTCTTATGCAACCATCATTGGACTTAGACATGAACATATACCCAACAAGACACTTTTCTGATCAAATCATAACACCATGCACAGAAATGATTCCTGTTCCTATGTTACCACCTGACTCTTCACATTTTCAAGAGGGTGGTCTCTTATTATTAGAAGATGAAAAATCACTTGCAATGGAACTTGCAGCTTCTTCTATGGCTGAACTTATTAAGATGTGTCAAATGAATGAACCGCTTTGGATTCGAAACGGTGAAAATGAAAGGGAAGTTCTTAATTTTGATGAACATGTTAGACTTTTTTCATGGCCTTTGAATCTTAAGCAGAGAAGTGAAATGAGGACAGAAGCTACACGTGATTCTGCTGTTGTTATTATGAATAGTGTTACTCTTGTTGATGCTTTTCTTGATGCTCAAAAATGGATGGAATTGTTTCCAACAATTGTTGCTAGAGCAAGAACTGTTCAAATTATAGCTTCTGGTGCTTCTGGTCATGCAAGTGGAACTCTTCAGCTGATGCATGCAGAATTCCAAGTTCTTTCTCCATTAGTGTCAACTAGAGAGACTCATTTTCTTCGATATTGTCAGCAAAATGCCGAGGAAGGAACATGGGCCATTGTAGATTTTCCTGTTGACAGCTTCCAACAAAATTTTCACAATTCTTATCCCAAATACTGCAGAAGATCTTCTGGCTGTGTCATTCAAGATATGCCAAATGGCTATTCAAGGGTAACTTGGGTTGAGCATGCAAAAGTTGTCGAAAAACCAGTTCATCAAATACTTAGCAACTATGTGTATAGTGGAATGGCATTTGGTGCACAACGTTGGTTAGGAGTTTTGCAAAGACAATGTGAAAGGGTTGCTAGTCTCATGGCTAGAAACATATCAGACCTTGGAGTGATACCTTCTCCGGAAGCGCGGAAGAACTTGATGAAACTAGCCAATAGGATGATAAAAACTTTTAGTCTTAATATGACAACTTGTGGTGGCCAATCATGGACTGCTATATCAGATTCACCAGAAGATACTGTTAGAATCACAACTAGGAAAATCACTGAGCCTGGTCAACCTAATGGTGTGATTCTCGCTGCGGTTTCAACCACTTGGCTTCCTTATTCTCATACCAAAGTCTTTGATCTCCTCCGCGATGAACGCCATAGATCTCAGATGGATGCACTTTCTAATGGGAACTCATTAAATGAAGTGGCTCATATTGCAAATGGTTCACATCCAGGAAACTGCATTTCCCTTCTTCGCATAAATGTTGCAAGTAACTCATCTCAAAATGTAGAGCTAATGCTGCAAGAGACTTGCACAGATCAATCTGGAAGCTTAGTAGTCTACACGACAATCGATGTTGATTCGATCCAGCTAGCTATGAGTGGTGAAGACCCTTCATGCATTTCACTTCTTCCACAAGGATTCATGATAGTACCAATGGTTTCATCAAACTCCGAGACATCATCTGAACAAGGTGTGACAGGAACACCATCATCAACTTCTagtgctgctgctgctgctaaCTCAGGTTGTCTTCTTATTATGGGAATGCAAGTTCTAGCAAGCACAATTCCTTCTGCAAAACTTAACCTTTCAAGTGTCACAGCAATCAATAATCACCTCTGCAATACCCTGCATCAAATTGAAAGTGCTTTATGTAGCACCACTAACAACAATTGCTTTGTTGGGTCTTGCAATGAACCAACCACTAGTGCACCTCCCAAGTAG 2424 0.3841 MYGDCQVMSTMGGGNVVVNSDSLFSSPIHNPNFNFMSTMPFQPFSSSMKEEDGMLRGKEEIMDQSGSGSEQVEDKSGNEQEINNEQETTKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENENLKNENYRLQAALRNIMCPNCGGQCIMGPDLGLDDHQLRLENARLRDELERVCCMTSRYTGRQIQTMAPPSSLMQPSLDLDMNIYPTRHFSDQIITPCTEMIPVPMLPPDSSHFQEGGLLLLEDEKSLAMELAASSMAELIKMCQMNEPLWIRNGENEREVLNFDEHVRLFSWPLNLKQRSEMRTEATRDSAVVIMNSVTLVDAFLDAQKWMELFPTIVARARTVQIIASGASGHASGTLQLMHAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFQQNFHNSYPKYCRRSSGCVIQDMPNGYSRVTWVEHAKVVEKPVHQILSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLANRMIKTFSLNMTTCGGQSWTAISDSPEDTVRITTRKITEPGQPNGVILAAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQETCTDQSGSLVVYTTIDVDSIQLAMSGEDPSCISLLPQGFMIVPMVSSNSETSSEQGVTGTPSSTSSAAAAANSGCLLIMGMQVLASTIPSAKLNLSSVTAINNHLCNTLHQIESALCSTTNNNCFVGSCNEPTTSAPPK 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01224 807 CDD homeodomain 91 149 IPR001356 GO:0003677
Tsu05g01224 807 MobiDBLite consensus disorder prediction 61 95 - -
Tsu05g01224 807 CDD START_ArGLABRA2_like 288 517 - -
Tsu05g01224 807 SUPERFAMILY Bet v1-like 536 781 - -
Tsu05g01224 807 Pfam START domain 294 518 IPR002913 GO:0008289
Tsu05g01224 807 MobiDBLite consensus disorder prediction 74 92 - -
Tsu05g01224 807 SUPERFAMILY Bet v1-like 286 520 - -
Tsu05g01224 807 Pfam Homeodomain 91 146 IPR001356 GO:0003677
Tsu05g01224 807 Coils Coil 147 177 - -
Tsu05g01224 807 SMART START_1 293 518 IPR002913 GO:0008289
Tsu05g01224 807 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Tsu05g01224 807 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Tsu05g01224 807 Gene3D - 75 159 - -
Tsu05g01224 807 ProSiteProfiles START domain profile. 284 521 IPR002913 GO:0008289
Tsu05g01224 807 SMART HOX_1 89 152 IPR001356 GO:0003677
Tsu05g01224 807 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 79 792 IPR042160 -
Tsu05g01224 807 PANTHER - 79 792 - -
Tsu05g01224 807 SUPERFAMILY Homeodomain-like 80 149 IPR009057 -
Tsu05g01224 807 Gene3D - 294 503 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01224 Tsu-Chr5 10919133 10925936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01224 8 787 Homeobox Transcription Factor Family AT5G46880 55.967 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu05g01224 START 6.1e-37 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01224 - - cam:101514650 1442.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01224 05 10919133 10925936 Tsu05g01224 05 10919133 10925936 ECH
Tsu05g01224 05 10919133 10925936 Tsu01g04458 01 52260794 52266287 ECH
Tsu05g01224 05 10919133 10925936 Tsu06g03095 06 40795084 40800464 ECH