Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01211 ATGAAAAGGCCATCTTCTTCATCACATTATAATTCCAACAGATTCCAAGAATCCACGCGAACACGCGCTTTCCAGAGACAACTACAACACCTATTCCATTTACATGATTCAGGTCTAGATCAAGCTGTCATAAACACTCTTCCTATTTTTAGCTACAAAGATTTATTAGGTTTGAAGGAACCTTTTGATTGTGCTGTATGTCTTTGTGAGTTTTCTGAGCAAGAGAAGCTGAGATTGGTTCCAATGTGTAGCCATGCTTTTCACATGAATTGTCTTGACACATGGCTTCTGTCAAATTCTACATGTCCTCTTTGTAGAGCAAATATCTCTAGCTCTAGTTTCCCTTTGGagaatgttgatgatgattctTTGGTTAgtcaaagagaaaaaataattgcAGAGGAAGAAAAAGTAGGAAAAAGAGTGTTTTCTGTGAGACTTGGAAAATTCAGAAATAATGGATTGGATTTGGAGGGTAGTAGTAATTGTAGTTTGGATGAAAGGAGATGTTATTCAATGAGTTCATATCAGTATGTGTTTTGTGATTCAAATTTGTCAGTGGTTTTGTCTGAATCTTGTTGTGATGATGAAAATGGGAATGTAGAGGGAAAGAGGATAGGGAACACAATCAAAGATGAGAGTTTTTCTGTTTCTAAGATATGGCTTTGGTCTAAGAAGAACAAATTTACTTGTTCTAATGCTGATTTTCCTTGA 714 0.3417 MKRPSSSSHYNSNRFQESTRTRAFQRQLQHLFHLHDSGLDQAVINTLPIFSYKDLLGLKEPFDCAVCLCEFSEQEKLRLVPMCSHAFHMNCLDTWLLSNSTCPLCRANISSSSFPLENVDDDSLVSQREKIIAEEEKVGKRVFSVRLGKFRNNGLDLEGSSNCSLDERRCYSMSSYQYVFCDSNLSVVLSESCCDDENGNVEGKRIGNTIKDESFSVSKIWLWSKKNKFTCSNADFP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01211 237 CDD RING-H2_PA-TM-RING 63 106 - -
Tsu05g01211 237 ProSiteProfiles Zinc finger RING-type profile. 64 106 IPR001841 -
Tsu05g01211 237 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 237 - -
Tsu05g01211 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 237 - -
Tsu05g01211 237 SMART ring_2 64 105 IPR001841 -
Tsu05g01211 237 Pfam Ring finger domain 63 106 IPR001841 -
Tsu05g01211 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 113 IPR013083 -
Tsu05g01211 237 SUPERFAMILY RING/U-box 43 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01211 Tsu-Chr5 10768382 10769123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01211 23 234 C3H Transcription Factor Family AT2G18650 37.857 7.94e-48 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01211 - - cam:101488909 349.362