Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01200 ATGGGTGATTTCATGGTGAACTTGCTCGAAAAATGGTGTGATTGTGGCAAATTTCAGGCTTTGCATTTGCCTTGTTCGCATGTAATTACTACATGCTCCCATGCTCGACAAAATTACAAGGTTTACATCAATGATGTCTACAAAGCTGCCAGCGTCTTATGCGTATATGATAACACCTTCCCAGTAATTCAAGACAAATCATATTGGCCCCAATATCAAGGTCGTCGACTCTGTCGCAACCCACATATGAAAAGATGTAACAAAGGTCGTCCGCAAAGTACGCGCATTAGGACGGAAATGGATGATACCGAAACTTTGAATAGaattgatggAGAAAGCAAGGAACTGGTGTTGGTTCTGGATGTGGCGCGTCGCGCCCGTGTTCCTGCGCGTAGCGCAGTGCTTGCTATTGTTGTTGCTGGTGTTTCTGTTGATGGCGCGTCGCGCGATTTTCAGCTCAGACAGGCTTCAGCATATGAAGGCATGTTGCATGCAGCTCAACATGGAATAATTGAGTTTGTAAATGCAATGAGGGATGCTAATCCTGAATTGCTTTCAGCTGTTGATAGTTGCCATAGAGGCATATTTTCTTATGCAGTTTTGTATCGTAAACAAAATGTGTTTCAACTCATACATTGTCTACATGGAAGGAAAGGGATATTAAGATATTGTATTGATATGTTTGGAAATAACTTGTTGCACTTGGCAGCACAGTTAGGTCCTTCATCTGATCGTGATACTAGATCTGGTGCTGCTCTACAAATGCAAAGAGAAATTCAATGGTTCAAGGCTGTGGAGGATCTTATGCATCCGAGGTCCAAGGAAGCCAAAAATCGTGATGGTAAGAAACCTTATGAGCTGTTTACCGAAAATCACGAGGAGCTAGTAAAAGCTGGAGAGAAATGGACAAAAGAGACAGCTAGCTCATATATAGCAGTGGCTTCTCTAATACTTACTATCATGTTTGCTGCGGCCTTCACTGTCCCTGGTGGAAACAATCAAGATACTGGGACACCCATTTTCTTGCATGAGAAGATATTTACTATGTTTATAATAGCTGATGCAGTATCTATCTTCAGTTCTGCCTCTTCAGTCTTGGTTTTCATTGGGATTCTCACATCGCGTTATGCTGAACAGGATTTTCTCAAGGTCTTGCCTTTGAAGTTGGTACTTGGCCTTGTACTCCTTCTTCTCTCTGTTTGCTCCATGATGGTTGCATTTTATGCTGCTCTAAATGTGATCTTAAAGGGGAATCACACTGGCAGCTCTAGGTGGTTCCTTCTAGGACCCATCGTTGCCCTCGGCACTCTGAAGGATCTTCAATCTCTTTTTCAGTGTGAGATGGATAAAACCGCAAAAGAGAAGGAGTCGAAGACGCCGCCACCAGCATCACAGCAGCCTTCGACCACCACAAGCACCGGAGCAATTAATAATGACTGGGCCAGCTTTCAGGCATATTCTCCTATGCCTCCACATGGATTCATGGCGTCAAGTCCCCAAGCTCACCCTTATATGTGGGGTGTCCAGCACATTATGCCTCCTTATGGTACTCCGCCACATCCCTATGTTGCAATGTATCCCCATGGTGGCATATATGCCCATCCATCCATGCCTCCGGGATCTTATCCATACAATCCTTATGCCATGCCTACTCCAAACGGTGTTGCTGAGGCTTCTGGAAACACTCCTGCCAGCATGGAAACTGATGGTAAACCTCCTGAGGTGAAGGAAAAATTGCCAATCaaaagatcaaaaggaagtttggGTAGTTTGAACATGATTACAGGGAAAAATAATGAACATGGTAAAACAGCGGGGACATCTGCTAATGGAATTCACTCAAAGAGTGGTGGTGAAAGTGGAAGTTTTGAAGGTACTAGTGAAGGAAGTGATGCAAATTCTCAGAATGACTCTCAATTGAAATCTGGGGACAGGCGGGATTCTTATGAAGGTGAACCGTCTCAAAACGGCAGTTCAGTGCATACTTCACAAAATGGAGGACTTAATGCACCTCATACAGTAGTTAATCAAAGTATGTCTGTCCTTCCTATCTCTGCGAGTGGTGCTCCTGGAGCTGTTGCTGGTCCCGCAACAAACTTAAATATAGGAATGGATTATTGGGGCACACCGAATTCATCCAACATTCCTGCTCTCCGTGGAAAGGTTCCGTCTACTACAGTTGCAGGAGGGGTGGTTACCGGTGGATCACGGGATAGTGTCCAGTCACAACTTTGGCTACAGGATGAAAGAGAACTTAAAAGACAAAGGCGGAAACAGTCTAATAGGGAATCTGCTCGGAGATCCAGGCTGCGCAAACAGGCCGAGTGCGATGAGCTAGCTCAGCGTGCTGATGttttgaaagaagaaaatgcTTCACTCCGATTAGAAGTAAGTCGCATTAGAAGCGAGTATGAGCAGCTACTTTCCGAGAATGCAGCCCTCAAGGAGAGACTTGGGGAACAACCTGCGAGCGATCAACACGTGCCTAACGAAACTCAACAGAGCGGTCAAACAGAAGCTGTGCAGGGTGGTCATTAG 2538 0.4441 MGDFMVNLLEKWCDCGKFQALHLPCSHVITTCSHARQNYKVYINDVYKAASVLCVYDNTFPVIQDKSYWPQYQGRRLCRNPHMKRCNKGRPQSTRIRTEMDDTETLNRIDGESKELVLVLDVARRARVPARSAVLAIVVAGVSVDGASRDFQLRQASAYEGMLHAAQHGIIEFVNAMRDANPELLSAVDSCHRGIFSYAVLYRKQNVFQLIHCLHGRKGILRYCIDMFGNNLLHLAAQLGPSSDRDTRSGAALQMQREIQWFKAVEDLMHPRSKEAKNRDGKKPYELFTENHEELVKAGEKWTKETASSYIAVASLILTIMFAAAFTVPGGNNQDTGTPIFLHEKIFTMFIIADAVSIFSSASSVLVFIGILTSRYAEQDFLKVLPLKLVLGLVLLLLSVCSMMVAFYAALNVILKGNHTGSSRWFLLGPIVALGTLKDLQSLFQCEMDKTAKEKESKTPPPASQQPSTTTSTGAINNDWASFQAYSPMPPHGFMASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPHGGIYAHPSMPPGSYPYNPYAMPTPNGVAEASGNTPASMETDGKPPEVKEKLPIKRSKGSLGSLNMITGKNNEHGKTAGTSANGIHSKSGGESGSFEGTSEGSDANSQNDSQLKSGDRRDSYEGEPSQNGSSVHTSQNGGLNAPHTVVNQSMSVLPISASGAPGAVAGPATNLNIGMDYWGTPNSSNIPALRGKVPSTTVAGGVVTGGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLKEENASLRLEVSRIRSEYEQLLSENAALKERLGEQPASDQHVPNETQQSGQTEAVQGGH 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01200 845 SMART 26again6 11 38 IPR006564 GO:0008270
Tsu05g01200 845 MobiDBLite consensus disorder prediction 555 672 - -
Tsu05g01200 845 Pfam Disordered region downstream of MFMR 577 716 - -
Tsu05g01200 845 SMART brlzneu 749 813 IPR004827 GO:0003700|GO:0006355
Tsu05g01200 845 MobiDBLite consensus disorder prediction 588 639 - -
Tsu05g01200 845 Pfam Domain of unknown function 300 411 IPR026961 -
Tsu05g01200 845 PANTHER BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN 446 845 - -
Tsu05g01200 845 MobiDBLite consensus disorder prediction 458 474 - -
Tsu05g01200 845 MobiDBLite consensus disorder prediction 813 845 - -
Tsu05g01200 845 SUPERFAMILY Leucine zipper domain 752 808 IPR046347 GO:0003700|GO:0006355
Tsu05g01200 845 ProSiteProfiles Zinc finger SWIM-type profile. 4 36 IPR007527 GO:0008270
Tsu05g01200 845 Gene3D - 752 806 - -
Tsu05g01200 845 Coils Coil 769 817 - -
Tsu05g01200 845 MobiDBLite consensus disorder prediction 825 845 - -
Tsu05g01200 845 MobiDBLite consensus disorder prediction 451 474 - -
Tsu05g01200 845 MobiDBLite consensus disorder prediction 652 672 - -
Tsu05g01200 845 CDD bZIP_plant_GBF1 754 804 IPR045314 GO:0003700|GO:0006355
Tsu05g01200 845 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 751 814 IPR004827 GO:0003700|GO:0006355
Tsu05g01200 845 Pfam bZIP transcription factor 749 811 IPR004827 GO:0003700|GO:0006355
Tsu05g01200 845 Pfam SWIM zinc finger 6 35 IPR007527 GO:0008270
Tsu05g01200 845 Pfam G-box binding protein MFMR 450 538 IPR012900 -
Tsu05g01200 845 MobiDBLite consensus disorder prediction 751 773 - -
Tsu05g01200 845 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 756 771 IPR004827 GO:0003700|GO:0006355
Tsu05g01200 845 PANTHER G-BOX-BINDING FACTOR 3-RELATED 446 845 IPR044827 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01200 Tsu-Chr5 10677410 10688034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01200 443 839 bZIP Transcription Factor Family AT2G35530 60.827 2.87e-156 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Tsu05g01200 MFMR_assoc 3.2e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01200 K09060 - gmx:778122 660.988