Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01163 ATGGCAGATAGTCCAGTATCATTTGTATTGGAGAAGATAACTTGGTTACTTGAAGAAGAAGTAAATCTACAAAGAGGGGTCCATGAAGATGTTCGATGCATCAAAGTCGAACTTGAACGCCATAAGGCCATCTTGGTAGTAGCTGATTCATTGGAAGACAAAAACCCTGAACTCAAAGCATGGGTTAAAAGAGTGAGAGATACTGCTCATGAAATGGAAGATGCTATAGATGAATACAATCTTCGCCTTGTTGATCATGAACAAGGCAACAATATTTGTTATTGTCAAGAGATTTGTTTTTACTTTAAGACCTTGAAAGCTAGGCATATAATAGCTTCAGATATTAAAGAAATCAAATCCAAGGTTGAAGCTATCTCTCAAGATCGTCCAAACACATCTGCAGGTTCAATCTCAATTCAAAGGAGGCTTGATAGTCAAGGTAATGCCCTCTTGCTAGAGGAAGCTGATTTAGTTGGAATTGAACAACCAAAGAAGCAGCTAATTGATTTGCTTATCAAAGATGAATCAAATGAAGAAGTGACTTCAATTTATAGTATGGAAGGTTTATGGAAAACAACATTAGGAAAACAAGTCTATGATCACCCAAAAGTCAAAGATGAATCAAATAGAGCAGTGATTTCAATTTATGGTATGGGAGGTTTAGGGAAAACAACTTTAGCCAAACAAGTCTATGATGATCCAAAAGTCAAGAAACATTTCAGGATTCATGCTTGGGTTAATCTATCTCAATCTTTAAAATCGGAAGATCTATTGAAAGACCTTGTTCAACAACTTTATAGTGTTATTGGTAAACCAGTTCCAAAAGAAGTTGAAATGAATAACAGTGACAAGGTAAAAGAGTTGATCAAGAATTTGCTTCTGAGAAGTAGGTACCTCATTGTACTTGATGATGTGTGGCATGTGGATGTATGGGATGCTGTGAAGCTTGCTTTGCCTAATAACAACCGCGAAAGTAGAGTGATACTTACAACGCGCAGGAGAGATATAGCTCGATATTGTTGTGCTGAATTAGGTAAGGATTTTGACCTTGAATTCTTACATGAACAAGAAGCTTGGTCACTTTTTTGTAAGAAGACATTTCAAGGTAACCCATGTCCTCCTCATCTTGAAGAAGTTTGTAGGAAGATCTTGAAATTGTGTGGAGGGTTGCCATTAGCAATTGTGGCAATCAGTGGTGCTTTGGCTACTAAAGAAAGATCAAACATAGAAGAGTGGCAGATAGTTTGCAGAAGCTTTGGATCTGAAATAAAAGGGAATGACAAATTGGAGGATATGAAGAAAGTACTTTCCTTAAGTTTCAATGAGTTGCCTTATCATCTTAAATCATGTTTATTGTATTTAAGCGTCTTTCCCGAATTTCACCCTATTGAGCATATGAGATTGATTCGATTGTGGATAGCTGAAGGGTTTGTAACTGGTGAAGATGGCAAGACACTGGAGGAAGTTGCAGATAGTTACCTTACGGAGCTTTTGAACAGAAGTTTTCTCCAAGTTGTAGAAAAATCCAGTGATGGAAGGATGAAGACTTGTCGCATGCATGGCCTTCTTAGGGAAATTGTCAATTATAAGTCAAGGGATCAAAACTTTGCAACAATAGCCAAAAAAGAACAAGAGCAAGATATGGTATGGCCCGAACGAGTTCGTTGTTTATCGGTCATAACTTCCTTAGATAATGTACTTAAACAGAATAAGACCATATTCAAACTTAGGTCTTTGCTAATGTTTGCATTATCAGATTCACTCAATCATTTTTCTATCCATGACTTATACTCCTCCGCTGGTGTTAAGTTGCTTAGAGTGTTAGATTTGCAGGATGCACCTTTGGAGGCTTTTCCTGCTGAAATTGTCGACCTATACCTTCTGAAGTATCTAAGTTTGAAGAATACAAAGGTGAAAAACATTCCTGGTTCCATTAAGAAGCTGCAAAACCTGGAGACGTTGGATCTTAAACACACTTATGTCACGGAACTTCCTGTTGAAATTGCGGAGCTGAAACGATTACGCCATCTCCTTGTGTATCGTTACGAGATTGAATCCTATGCTCACTTCGACGCAAGGCATGGATTCAAAGTGGTTGCACCTATAGGGAACATGCAATCATTACAAAAGCTATGTTTCATAGAGGTAGATCAAGGAAGTGGAGACTTGATGGTTGAGTTAGGAAAACTTACTCAACTTAGGAGGCTAGGCATTAGAAAAATGAGGAAAGAAGATGGTGCTGCTTTGTGTTCATCGATTGAGAAAATGGTCAATCTAACATCACTATCGATAACTGCAATAAAAGAAGATGAGATAATTGATATTCACAGCATTTCAAAGCCTCCTCGATTTCTTCAGAAGTTATACTTGAGCGGACGTTTAGAGAAGTTTCCACAATGGATAAAATCTTGCAATAATTTAGTCAGAGTTTTCTTAAAATGGAGCAGGTTAGAGGAGGATCCACTGGCGTATCTTCAAGGTTTGCCAAATCTTCGACATCTTGAGTTTCTTCAAGTGTTTGTTGGTGAGACATTGCATTTCAACGCAAAAGGGTTTCCAAGTCTAAAGGTATTAGGCCTTGATGATTTAAAAGGGCTAGAATCTATGATAATTGAGGAAGGAGCAATGCATGGTCTTAAGAAGTTGATCATCCAACGTTGTGGTTTGCTCAAGCATGTACCAGTAGGCCTTAAACACCTATCTAAGCTAAAAACAATTGAGTTCTTTGATATGCCTGATGAATTGCTTATGGCACTGCGTCCAAATGGAGGCGAAGAGTTTTGTAGAGTACAGCATGTTCCAACAGTTTATACTACTTATTGGAGGGATGGTGGTTGGGATGTTTATTCTTTAGAGACTTTTGGGGAGAGAGAGACTGATTCCAATCATAGTAGTGCTAAGAGGACTCTTGAGCTTCCTACTCTTTGGAAggtttaa 2937 0.38 MADSPVSFVLEKITWLLEEEVNLQRGVHEDVRCIKVELERHKAILVVADSLEDKNPELKAWVKRVRDTAHEMEDAIDEYNLRLVDHEQGNNICYCQEICFYFKTLKARHIIASDIKEIKSKVEAISQDRPNTSAGSISIQRRLDSQGNALLLEEADLVGIEQPKKQLIDLLIKDESNEEVTSIYSMEGLWKTTLGKQVYDHPKVKDESNRAVISIYGMGGLGKTTLAKQVYDDPKVKKHFRIHAWVNLSQSLKSEDLLKDLVQQLYSVIGKPVPKEVEMNNSDKVKELIKNLLLRSRYLIVLDDVWHVDVWDAVKLALPNNNRESRVILTTRRRDIARYCCAELGKDFDLEFLHEQEAWSLFCKKTFQGNPCPPHLEEVCRKILKLCGGLPLAIVAISGALATKERSNIEEWQIVCRSFGSEIKGNDKLEDMKKVLSLSFNELPYHLKSCLLYLSVFPEFHPIEHMRLIRLWIAEGFVTGEDGKTLEEVADSYLTELLNRSFLQVVEKSSDGRMKTCRMHGLLREIVNYKSRDQNFATIAKKEQEQDMVWPERVRCLSVITSLDNVLKQNKTIFKLRSLLMFALSDSLNHFSIHDLYSSAGVKLLRVLDLQDAPLEAFPAEIVDLYLLKYLSLKNTKVKNIPGSIKKLQNLETLDLKHTYVTELPVEIAELKRLRHLLVYRYEIESYAHFDARHGFKVVAPIGNMQSLQKLCFIEVDQGSGDLMVELGKLTQLRRLGIRKMRKEDGAALCSSIEKMVNLTSLSITAIKEDEIIDIHSISKPPRFLQKLYLSGRLEKFPQWIKSCNNLVRVFLKWSRLEEDPLAYLQGLPNLRHLEFLQVFVGETLHFNAKGFPSLKVLGLDDLKGLESMIIEEGAMHGLKKLIIQRCGLLKHVPVGLKHLSKLKTIEFFDMPDELLMALRPNGGEEFCRVQHVPTVYTTYWRDGGWDVYSLETFGERETDSNHSSAKRTLELPTLWKV 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01163 978 Pfam NB-ARC domain 205 441 IPR002182 GO:0043531
Tsu05g01163 978 Gene3D - 352 439 IPR042197 -
Tsu05g01163 978 Gene3D - 145 206 IPR027417 -
Tsu05g01163 978 CDD RX-CC_like 2 126 IPR038005 -
Tsu05g01163 978 Gene3D Ribonuclease Inhibitor 535 916 IPR032675 -
Tsu05g01163 978 Gene3D - 440 530 IPR036388 -
Tsu05g01163 978 Gene3D - 5 112 - -
Tsu05g01163 978 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 454 IPR027417 -
Tsu05g01163 978 PANTHER OS08G0539900 PROTEIN 150 205 - -
Tsu05g01163 978 PANTHER OS08G0539900 PROTEIN 1 132 - -
Tsu05g01163 978 PANTHER OS08G0539900 PROTEIN 209 941 - -
Tsu05g01163 978 Coils Coil 62 82 - -
Tsu05g01163 978 PANTHER DISEASE RESISTANCE PROTEIN RP 150 205 IPR044974 GO:0006952
Tsu05g01163 978 PANTHER DISEASE RESISTANCE PROTEIN RP 209 941 IPR044974 GO:0006952
Tsu05g01163 978 PANTHER DISEASE RESISTANCE PROTEIN RP 1 132 IPR044974 GO:0006952
Tsu05g01163 978 Gene3D - 207 343 IPR027417 -
Tsu05g01163 978 SUPERFAMILY L domain-like 519 914 - -
Tsu05g01163 978 Pfam Rx N-terminal domain 6 87 IPR041118 -
Tsu05g01163 978 PRINTS Disease resistance protein signature 212 227 - -
Tsu05g01163 978 PRINTS Disease resistance protein signature 292 306 - -
Tsu05g01163 978 PRINTS Disease resistance protein signature 387 401 - -
Tsu05g01163 978 PRINTS Disease resistance protein signature 646 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01163 Tsu-Chr5 10284489 10288405 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01163 213 659 WRKY Transcription Factor Family AT5G45050 24.094 4.28e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01163 K13457 - gmx:100305458 1397.49