Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu05g01159 | ATGGGTAAGAAGAACGGCGCCGTTTTAGCCACCGAACCAGTCGCAGAACAACAAACCAATAACAACAACACAGAACTCAAATCTTCGAAGAAgaacaaaaagaacaaaaacaaacacaatctTCAAACCGAAGAAGAAAACACTCCTAAAAGAAAGCACGAAGAACTCAACAATCAAAACGACACCGAATCGGAGAAgaaaagtaagaagaagaaaaagcatAACAAATCGGATGAAAATGACTCAGGTAACGGTGTTGAGGAGACGGTTTCTGCATCGGATGAACCGATTACGGTTACTGGAAAGAATGCGAAAGATGAGAAATATGCGGCGGTTAAAACTTTTGTTGGTTCTGGACTTCCTGATAATGTGCTTGAATGTTGTAAGGGTTTTGAGAAACCTTCTCCGATTCAATCACGAGCTTGGCCTTTTTTGTTGGATGGTCGTGATTTGATTGGAATTGCAGCTACTGGTTCAGGAAAAACACTTGCTTTTGGACTACCAGCTATTATGCATGTTTTGAATAAGCGGAAGAATAAGGTTTCTTCCAAGGGTCGAAATCCTCTTTGCCTTATGCTCTCTCCAACAAGGGAGCTAGCTCAACAAATATCAGATGTATTGTGTGATGCTGGTAAGTCTTGTGGCGTTGAATCAATTTGTTTGTATGGTGGAACCTCCAAAGGACCACAAATCTCTGCACTTAAATCTGGCATTGATATTGTCATTGGAACCCCTGGTCGTATTCAAGATCTGGTTGAAATGGGTATCTGTCGTCTACAAGAAGTATCTTTTGTGGTACTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAGCAAATAGTCCGCTCTATACTTGGTCAGACATGTTCTGCTCGTCAAATGGTTATGTTCAGTGCTACATGGCCGTTAGCAGTTCATCACTTAGCTCAGGAATTTATGGATCCCAACCCTGTTAAAGTTGTTGTAGGGTCAGAGGATTTATCTGCCAATCATGATGTCATGCAGATAGTTGAGGTATTGGATGAGCGTTTACGTGATAAGCGCCTGCTTGCTTTACTAGAAAAATACCACAAATCTCAAAAGAATCGAgtattggtttttgttttgtacaAATGGGAAACCACACGAGTTGAAAAAATGCTTCAACAAGGGGGTTGGAAAGCGGTGTCAATAAGTGGTGACAAATCACAGCATGAGCGCACAAAGGCACTATCATTATTCAAGAATGGAAGCTGTCCTTTGATGATTGCTACTGATGTGGCTGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTTTAGTTTTCCTCTAACTCTAGAAGATTATGTTCATAGAATTGGTCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACTCAAGCAAATAAGGGACTTTCTGGGGAGCTTGTGAATGTTTTAAGAGAAGCAGGACAAGTTGTGCCAGACGATCTTTTGAAATTCGGCACACATGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAAATTCCTGTTGATGCTCCAAAGTCTAAGAAAATAACATTTGATAACTCTGATGATGAAGACTAA | 1602 | 0.3958 | MGKKNGAVLATEPVAEQQTNNNNTELKSSKKNKKNKNKHNLQTEEENTPKRKHEELNNQNDTESEKKSKKKKKHNKSDENDSGNGVEETVSASDEPITVTGKNAKDEKYAAVKTFVGSGLPDNVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGLPAIMHVLNKRKNKVSSKGRNPLCLMLSPTRELAQQISDVLCDAGKSCGVESICLYGGTSKGPQISALKSGIDIVIGTPGRIQDLVEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTCSARQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKNRVLVFVLYKWETTRVEKMLQQGGWKAVSISGDKSQHERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTQANKGLSGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEIPVDAPKSKKITFDNSDDED | 533 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu05g01159 | 533 | Coils | Coil | 53 | 73 | - | - | |
Tsu05g01159 | 533 | Gene3D | - | 58 | 323 | IPR027417 | - | |
Tsu05g01159 | 533 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 187 | 469 | IPR027417 | - | |
Tsu05g01159 | 533 | MobiDBLite | consensus disorder prediction | 1 | 99 | - | - | |
Tsu05g01159 | 533 | PANTHER | BNAA08G07020D PROTEIN | 10 | 519 | - | - | |
Tsu05g01159 | 533 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 333 | 496 | IPR001650 | - | |
Tsu05g01159 | 533 | SMART | helicmild6 | 376 | 457 | IPR001650 | - | |
Tsu05g01159 | 533 | CDD | SF2_C_DEAD | 334 | 466 | - | - | |
Tsu05g01159 | 533 | MobiDBLite | consensus disorder prediction | 38 | 83 | - | - | |
Tsu05g01159 | 533 | MobiDBLite | consensus disorder prediction | 12 | 26 | - | - | |
Tsu05g01159 | 533 | Pfam | Helicase conserved C-terminal domain | 349 | 457 | IPR001650 | - | |
Tsu05g01159 | 533 | MobiDBLite | consensus disorder prediction | 84 | 98 | - | - | |
Tsu05g01159 | 533 | Pfam | DEAD/DEAH box helicase | 136 | 305 | IPR011545 | GO:0003676|GO:0005524 | |
Tsu05g01159 | 533 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 142 | 320 | IPR014001 | - | |
Tsu05g01159 | 533 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 10 | 519 | - | - | |
Tsu05g01159 | 533 | SMART | ultradead3 | 130 | 337 | IPR014001 | - | |
Tsu05g01159 | 533 | CDD | DEADc | 129 | 321 | - | - | |
Tsu05g01159 | 533 | Gene3D | - | 324 | 499 | IPR027417 | - | |
Tsu05g01159 | 533 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 266 | 274 | IPR000629 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu05g01159 | Tsu-Chr5 | 10240808 | 10246191 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu05g01159 | 112 | 465 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 32.865 | 6.02e-54 | 186 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu05g01159 | K14811 | - | gmx:100305353 | 814.298 |