Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01159 ATGGGTAAGAAGAACGGCGCCGTTTTAGCCACCGAACCAGTCGCAGAACAACAAACCAATAACAACAACACAGAACTCAAATCTTCGAAGAAgaacaaaaagaacaaaaacaaacacaatctTCAAACCGAAGAAGAAAACACTCCTAAAAGAAAGCACGAAGAACTCAACAATCAAAACGACACCGAATCGGAGAAgaaaagtaagaagaagaaaaagcatAACAAATCGGATGAAAATGACTCAGGTAACGGTGTTGAGGAGACGGTTTCTGCATCGGATGAACCGATTACGGTTACTGGAAAGAATGCGAAAGATGAGAAATATGCGGCGGTTAAAACTTTTGTTGGTTCTGGACTTCCTGATAATGTGCTTGAATGTTGTAAGGGTTTTGAGAAACCTTCTCCGATTCAATCACGAGCTTGGCCTTTTTTGTTGGATGGTCGTGATTTGATTGGAATTGCAGCTACTGGTTCAGGAAAAACACTTGCTTTTGGACTACCAGCTATTATGCATGTTTTGAATAAGCGGAAGAATAAGGTTTCTTCCAAGGGTCGAAATCCTCTTTGCCTTATGCTCTCTCCAACAAGGGAGCTAGCTCAACAAATATCAGATGTATTGTGTGATGCTGGTAAGTCTTGTGGCGTTGAATCAATTTGTTTGTATGGTGGAACCTCCAAAGGACCACAAATCTCTGCACTTAAATCTGGCATTGATATTGTCATTGGAACCCCTGGTCGTATTCAAGATCTGGTTGAAATGGGTATCTGTCGTCTACAAGAAGTATCTTTTGTGGTACTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAGCAAATAGTCCGCTCTATACTTGGTCAGACATGTTCTGCTCGTCAAATGGTTATGTTCAGTGCTACATGGCCGTTAGCAGTTCATCACTTAGCTCAGGAATTTATGGATCCCAACCCTGTTAAAGTTGTTGTAGGGTCAGAGGATTTATCTGCCAATCATGATGTCATGCAGATAGTTGAGGTATTGGATGAGCGTTTACGTGATAAGCGCCTGCTTGCTTTACTAGAAAAATACCACAAATCTCAAAAGAATCGAgtattggtttttgttttgtacaAATGGGAAACCACACGAGTTGAAAAAATGCTTCAACAAGGGGGTTGGAAAGCGGTGTCAATAAGTGGTGACAAATCACAGCATGAGCGCACAAAGGCACTATCATTATTCAAGAATGGAAGCTGTCCTTTGATGATTGCTACTGATGTGGCTGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTTTAGTTTTCCTCTAACTCTAGAAGATTATGTTCATAGAATTGGTCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACTCAAGCAAATAAGGGACTTTCTGGGGAGCTTGTGAATGTTTTAAGAGAAGCAGGACAAGTTGTGCCAGACGATCTTTTGAAATTCGGCACACATGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAAATTCCTGTTGATGCTCCAAAGTCTAAGAAAATAACATTTGATAACTCTGATGATGAAGACTAA 1602 0.3958 MGKKNGAVLATEPVAEQQTNNNNTELKSSKKNKKNKNKHNLQTEEENTPKRKHEELNNQNDTESEKKSKKKKKHNKSDENDSGNGVEETVSASDEPITVTGKNAKDEKYAAVKTFVGSGLPDNVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGLPAIMHVLNKRKNKVSSKGRNPLCLMLSPTRELAQQISDVLCDAGKSCGVESICLYGGTSKGPQISALKSGIDIVIGTPGRIQDLVEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTCSARQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKNRVLVFVLYKWETTRVEKMLQQGGWKAVSISGDKSQHERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTQANKGLSGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEIPVDAPKSKKITFDNSDDED 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01159 533 Coils Coil 53 73 - -
Tsu05g01159 533 Gene3D - 58 323 IPR027417 -
Tsu05g01159 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 469 IPR027417 -
Tsu05g01159 533 MobiDBLite consensus disorder prediction 1 99 - -
Tsu05g01159 533 PANTHER BNAA08G07020D PROTEIN 10 519 - -
Tsu05g01159 533 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 496 IPR001650 -
Tsu05g01159 533 SMART helicmild6 376 457 IPR001650 -
Tsu05g01159 533 CDD SF2_C_DEAD 334 466 - -
Tsu05g01159 533 MobiDBLite consensus disorder prediction 38 83 - -
Tsu05g01159 533 MobiDBLite consensus disorder prediction 12 26 - -
Tsu05g01159 533 Pfam Helicase conserved C-terminal domain 349 457 IPR001650 -
Tsu05g01159 533 MobiDBLite consensus disorder prediction 84 98 - -
Tsu05g01159 533 Pfam DEAD/DEAH box helicase 136 305 IPR011545 GO:0003676|GO:0005524
Tsu05g01159 533 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 320 IPR014001 -
Tsu05g01159 533 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 10 519 - -
Tsu05g01159 533 SMART ultradead3 130 337 IPR014001 -
Tsu05g01159 533 CDD DEADc 129 321 - -
Tsu05g01159 533 Gene3D - 324 499 IPR027417 -
Tsu05g01159 533 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 266 274 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01159 Tsu-Chr5 10240808 10246191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01159 112 465 Eukaryotic Initiation Factors Gene Family AT3G19760 32.865 6.02e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01159 K14811 - gmx:100305353 814.298