Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01154 ATGGATCAATTGTCTCAAATTAACTTAAATGAAAGGGCTTCAATTCATGACCCTTCTGAGAATATCATTGAACAACAAAAGAATGTTGACACTGATATGATTGAGTCGGGTAGCGAGACCGTGCTTGTAAATTCTGATGCAAATAGTAGTTTAATTCAAGCCGAGTCCATACCACAAGAAACTCAGGACGTCGTAGATGGAGCGGATAAAAAAAGGAAACATTGGAAAGAAGATGAACACAGGTTGTTTCTGCAAGGACTAAACAAACATGGTAGGGGACGTTGGAAAGATATTTCAAAAGAATTTGTGCCCGGAAGAACTCCAACTCAGATTGCTAGTCATGCTCAAAAATACTTCAAACATCTAAAAGAAGTCGCGGGAaaagagaggaagaagagaagaagtaTTCATGACACAACCGTCCACAACAATGGTGCATTAGTCCGTCTCCCTATTGAACAAGTTGAGATTCCTTCGACCGAACAACAAAATGAAATTCCTCGTTTGATCGTTCCCTCTATTGAACAGCAGATTGAAATTCCTTCAATTGAAGGACAAAATAAGGTCACTCATCCTGTTGAACAACAAAATGAGAATATTTCTCCTCACAGCAGAACCTTAAATGACAACACCATTGACAAGTTGGTCACTCCTCCCATTGAGACCTTTCAAGAAATGGAGAGCCAACTAAAACTTGGGTACACATTTACGGTCGAAATTTCACCTCACAATGTGAAGAATGTCGTTAAGGTGTGTGAATTGTTGGAAAAGGCCTTAAAAAGTTGA 786 0.3804 MDQLSQINLNERASIHDPSENIIEQQKNVDTDMIESGSETVLVNSDANSSLIQAESIPQETQDVVDGADKKRKHWKEDEHRLFLQGLNKHGRGRWKDISKEFVPGRTPTQIASHAQKYFKHLKEVAGKERKKRRSIHDTTVHNNGALVRLPIEQVEIPSTEQQNEIPRLIVPSIEQQIEIPSIEGQNKVTHPVEQQNENISPHSRTLNDNTIDKLVTPPIETFQEMESQLKLGYTFTVEISPHNVKNVVKVCELLEKALKS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01154 261 ProSiteProfiles Myb-like domain profile. 67 119 IPR001005 -
Tsu05g01154 261 SMART sant 71 121 IPR001005 -
Tsu05g01154 261 PANTHER TRANSCRIPTION FACTOR SRM1 10 216 - -
Tsu05g01154 261 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 70 121 IPR006447 GO:0003677
Tsu05g01154 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 123 IPR017930 -
Tsu05g01154 261 SUPERFAMILY Homeodomain-like 69 124 IPR009057 -
Tsu05g01154 261 MobiDBLite consensus disorder prediction 1 22 - -
Tsu05g01154 261 Pfam Myb-like DNA-binding domain 72 119 IPR001005 -
Tsu05g01154 261 Gene3D - 73 125 - -
Tsu05g01154 261 ProSiteProfiles SANT domain profile. 75 123 IPR017884 -
Tsu05g01154 261 PANTHER TRANSCRIPTION FACTOR KUA1 10 216 - -
Tsu05g01154 261 CDD SANT 75 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01154 Tsu-Chr5 10135140 10154411 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu05g01154 Myb_DNA-binding 4.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01154 - - mtr:MTR_5g088060 174.481